Variant report

Variant	rs535152112
Chromosome Location	chr7:6744343-6744344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr7:6744174-6744533	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:6727828..6730097-chr7:6741325..6744372,3	MCF-7	breast:
2	chr7:6736883..6740896-chr7:6741673..6744991,4	MCF-7	breast:
3	chr7:6738166..6741088-chr7:6742524..6744616,4	MCF-7	breast:
4	chr7:6733958..6736454-chr7:6743190..6744750,2	MCF-7	breast:
5	chr7:6700299..6703221-chr7:6744305..6746051,2	MCF-7	breast:
6	chr7:6743479..6745149-chr7:6745557..6748493,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF12	TF binding region
ENSG00000164631	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
2	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
4	nsv1015277	chr7:6705439-7303195	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv887439	chr7:6736332-6791749	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1015646	chr7:6738483-6779270	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv887440	chr7:6743097-6820508	Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6721400-6745200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr7:6721600-6744600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:6721600-6745400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:6722400-6745000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
5	chr7:6722600-6745000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:6723600-6745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:6723600-6745400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:6723800-6745000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:6724000-6744800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:6725000-6744800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:6725800-6745000	ZNF genes & repeats	NH-A	brain
12	chr7:6726000-6744800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr7:6726000-6745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:6726000-6745000	ZNF genes & repeats	Fetal Muscle Leg	muscle
15	chr7:6726000-6745200	ZNF genes & repeats	A549	lung
16	chr7:6726200-6745000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
17	chr7:6726200-6745000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr7:6726200-6745000	ZNF genes & repeats	Fetal Lung	lung
19	chr7:6726400-6744800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chr7:6726600-6745000	ZNF genes & repeats	GM12878-XiMat	blood
21	chr7:6730800-6745000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:6731200-6745400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:6733200-6745200	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr7:6733600-6744800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:6738000-6744800	Strong transcription	Fetal Thymus	thymus
26	chr7:6738800-6744800	ZNF genes & repeats	Fetal Stomach	stomach
27	chr7:6739400-6745600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr7:6739600-6745400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr7:6740200-6745200	ZNF genes & repeats	K562	blood
30	chr7:6740600-6745200	ZNF genes & repeats	HSMM	muscle
31	chr7:6741000-6745000	ZNF genes & repeats	Fetal Intestine Large	intestine
32	chr7:6741200-6744400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
33	chr7:6741400-6744800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr7:6741600-6744600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
35	chr7:6741600-6744800	ZNF genes & repeats	Fetal Kidney	kidney
36	chr7:6741800-6744400	Genic enhancers	Primary T cells fromperipheralblood	blood
37	chr7:6741800-6744800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
38	chr7:6741800-6745000	ZNF genes & repeats	Osteobl	bone
39	chr7:6742000-6744800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:6742000-6745000	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr7:6742000-6745600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:6742800-6745000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
43	chr7:6742800-6745200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:6743000-6744800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr7:6743000-6744800	Strong transcription	Brain Anterior Caudate	brain
46	chr7:6743000-6744800	Strong transcription	Placenta	Placenta
47	chr7:6743400-6744400	Strong transcription	Fetal Brain Female	brain
48	chr7:6743400-6744600	Genic enhancers	Stomach Smooth Muscle	stomach
49	chr7:6743600-6744400	Genic enhancers	Dnd41	blood
50	chr7:6743600-6744400	Weak transcription	NHEK	skin

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