Variant report

Variant	rs535574875
Chromosome Location	chr11:8829197-8829198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8827149..8829298-chr11:8831731..8833459,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166444	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv527920	chr11:8816695-8856822	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv527073	chr11:8829168-8848463	Flanking Active TSS Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8809000-8830200	Weak transcription	Fetal Brain Male	brain
2	chr11:8809200-8829200	Weak transcription	Fetal Kidney	kidney
3	chr11:8811800-8830400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:8811800-8830600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:8816400-8831800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:8816600-8830000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:8816600-8830600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:8819800-8829800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:8821600-8830200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr11:8824200-8830400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:8825200-8829400	Enhancers	Right Ventricle	heart
12	chr11:8825400-8829400	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:8825400-8829400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr11:8825400-8830400	Enhancers	Left Ventricle	heart
15	chr11:8825600-8829600	Enhancers	Gastric	stomach
16	chr11:8826400-8829800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:8826400-8830600	Enhancers	Brain Angular Gyrus	brain
18	chr11:8826600-8830200	Enhancers	Pancreas	Pancrea
19	chr11:8827200-8829200	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr11:8827400-8830400	Enhancers	Psoas Muscle	Psoas
21	chr11:8827400-8831200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:8827600-8830600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:8827600-8831000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr11:8827800-8829200	Enhancers	Fetal Muscle Leg	muscle
25	chr11:8827800-8829400	Enhancers	Fetal Heart	heart
26	chr11:8827800-8829800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:8827800-8830200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:8827800-8830800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:8828000-8830000	Enhancers	Esophagus	oesophagus
30	chr11:8828000-8830800	Enhancers	Brain Germinal Matrix	brain
31	chr11:8828200-8829200	Flanking Active TSS	HSMM	muscle
32	chr11:8828200-8829600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:8828200-8829600	Flanking Active TSS	Rectal Smooth Muscle	rectum
34	chr11:8828200-8830200	Flanking Active TSS	Colon Smooth Muscle	Colon
35	chr11:8828200-8830200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr11:8828200-8830400	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr11:8828200-8831000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr11:8828400-8829200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr11:8828400-8829400	Enhancers	Placenta	Placenta
40	chr11:8828400-8829800	Flanking Active TSS	Colonic Mucosa	Colon
41	chr11:8828400-8830000	Enhancers	Lung	lung
42	chr11:8828400-8830400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:8828400-8831000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:8828600-8829200	Flanking Active TSS	Ovary	ovary
45	chr11:8828600-8829200	Enhancers	Small Intestine	intestine
46	chr11:8828600-8829600	Flanking Active TSS	Fetal Muscle Trunk	muscle
47	chr11:8828600-8830000	Enhancers	Fetal Intestine Large	intestine
48	chr11:8828600-8830000	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr11:8828600-8830600	Enhancers	Fetal Intestine Small	intestine
50	chr11:8828600-8830800	Transcr. at gene 5' and 3'	Fetal Stomach	stomach

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