Variant report

Variant	rs536282961
Chromosome Location	chr21:17565848-17565849
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr21:17565209-17566054	Hela-S3	cervix:	n/a	chr21:17565801-17565810
2	MYC	chr21:17565848-17565976	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
LINC00478	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066951	chr21:17458978-17603160	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv544381	chr21:17458978-17603160	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1065028	chr21:17522588-17572535	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv432145	chr21:17559229-17628529	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17553400-17566400	Weak transcription	Fetal Stomach	stomach
2	chr21:17558400-17566400	Weak transcription	Brain Anterior Caudate	brain
3	chr21:17559000-17571200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr21:17559600-17566200	Weak transcription	Ovary	ovary
5	chr21:17559600-17566600	Weak transcription	Placenta	Placenta
6	chr21:17563600-17567200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr21:17564600-17566200	Enhancers	Hela-S3	cervix
8	chr21:17565200-17566000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr21:17565200-17566200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr21:17565200-17566200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr21:17565200-17566200	Enhancers	Fetal Kidney	kidney
12	chr21:17565200-17566600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr21:17565400-17566200	Enhancers	HUVEC	blood vessel
14	chr21:17565400-17566200	Enhancers	NHDF-Ad	bronchial
15	chr21:17565400-17566200	Enhancers	Osteobl	bone
16	chr21:17565400-17566400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr21:17565400-17566400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr21:17565400-17566400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr21:17565400-17566400	Enhancers	HSMM	muscle
20	chr21:17565400-17570000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr21:17565600-17566200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr21:17565600-17566200	Weak transcription	Brain Hippocampus Middle	brain
23	chr21:17565600-17566400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr21:17565600-17566400	Weak transcription	Fetal Intestine Large	intestine
25	chr21:17565600-17566600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr21:17565600-17566600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr21:17565600-17566600	Weak transcription	Thymus	Thymus
28	chr21:17565800-17566000	Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr21:17565800-17566000	Flanking Active TSS	A549	lung
30	chr21:17565800-17566200	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr21:17565800-17566200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr21:17565800-17566200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr21:17565800-17566200	Enhancers	Primary hematopoietic stem cells	blood
34	chr21:17565800-17566200	Enhancers	Adipose Nuclei	Adipose
35	chr21:17565800-17566200	Weak transcription	NH-A	brain
36	chr21:17565800-17566600	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr21:17565800-17566800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links