Variant report

Variant	rs536571402
Chromosome Location	chr19:35656147-35656148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35654052..35658593-chr19:35736953..35742683,9	K562	blood:
2	chr19:35655616..35658079-chr19:35755834..35757875,2	MCF-7	breast:
3	chr19:35652170..35655595-chr19:35655947..35659208,4	MCF-7	breast:
4	chr19:35653961..35658211-chr19:35756444..35760028,4	K562	blood:
5	chr19:35655231..35657834-chr19:35695851..35698454,2	MCF-7	breast:
6	chr19:35653961..35659020-chr19:35755691..35760689,8	K562	blood:

Variant related genes	Relation type
ENSG00000105698	Chromatin interaction
ENSG00000089327	Chromatin interaction
ENSG00000105699	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911616	chr19:35577870-35669071	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	esv2757694	chr19:35653642-35673333	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758757	chr19:35653642-35673333	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv2470	chr19:35655281-35702565	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35646600-35656800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:35647800-35657000	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr19:35648000-35661600	Strong transcription	H1 Cell Line	embryonic stem cell
4	chr19:35648000-35661800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr19:35648200-35656600	Strong transcription	Fetal Thymus	thymus
6	chr19:35648200-35662800	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr19:35648400-35657000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr19:35649200-35657000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr19:35649400-35656400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr19:35649400-35656800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr19:35649400-35657400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
12	chr19:35650000-35656600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr19:35650800-35656600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
14	chr19:35651800-35657000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
15	chr19:35651800-35657000	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr19:35652000-35657400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr19:35652000-35657600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
18	chr19:35652000-35661800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
19	chr19:35652200-35657800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr19:35652200-35657800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
21	chr19:35652200-35658000	ZNF genes & repeats	GM12878-XiMat	blood
22	chr19:35652200-35658200	ZNF genes & repeats	A549	lung
23	chr19:35652400-35656200	ZNF genes & repeats	NH-A	brain
24	chr19:35652400-35657400	ZNF genes & repeats	Primary B cells from cord blood	blood
25	chr19:35652400-35657800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr19:35652400-35658400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
27	chr19:35652400-35658400	ZNF genes & repeats	Lung	lung
28	chr19:35652400-35658600	ZNF genes & repeats	Placenta	Placenta
29	chr19:35652600-35657400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr19:35652800-35656600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr19:35653000-35656800	Genic enhancers	K562	blood
32	chr19:35653000-35658000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
33	chr19:35653200-35656400	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr19:35653200-35658000	ZNF genes & repeats	HMEC	breast
35	chr19:35653400-35657400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr19:35653400-35657600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr19:35653400-35658000	ZNF genes & repeats	Fetal Intestine Small	intestine
38	chr19:35653400-35663800	Weak transcription	Stomach Mucosa	stomach
39	chr19:35653600-35657000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr19:35653600-35658000	ZNF genes & repeats	Osteobl	bone
41	chr19:35653600-35667400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr19:35653800-35656400	Weak transcription	Liver	Liver
43	chr19:35653800-35658800	Strong transcription	Dnd41	blood
44	chr19:35653800-35659000	Strong transcription	Placenta Amnion	Placenta Amnion
45	chr19:35653800-35661400	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr19:35654000-35656800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr19:35654200-35656600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr19:35654200-35656600	Strong transcription	Adipose Nuclei	Adipose
49	chr19:35654400-35656600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr19:35654600-35657200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links