Variant report

Variant	rs536619756
Chromosome Location	chr6:58775029-58775030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:58772384..58775379-chr6:58777406..58779060,3	K562	blood:
2	chr20:36661511..36663112-chr6:58773928..58776889,2	K562	blood:
3	chr14:19022553..19024053-chr6:58774785..58777168,2	MCF-7	breast:
4	chr10:74031778..74033740-chr6:58774757..58776794,2	MCF-7	breast:
5	chr17:57920187..57922882-chr6:58774753..58776582,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101407	Chromatin interaction
ENSG00000168209	Chromatin interaction
ENSG00000101413	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603237	chr6:58231219-58780055	Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
2	nsv427758	chr6:58502261-58780166	ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
3	nsv603241	chr6:58567162-58775043	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv603242	chr6:58754939-58776198	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	nsv603243	chr6:58754939-58779628	Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
6	esv3401131	chr6:58771993-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
7	esv3348712	chr6:58772493-58780166	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
8	esv3351952	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
9	esv3370259	chr6:58772493-58780166	Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
10	esv3402710	chr6:58772493-58780166	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
11	nsv821263	chr6:58773370-58780132	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
12	esv16605	chr6:58773521-58780132	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
13	esv3522846	chr6:58773602-58777174	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	30 gene(s)	inside rSNPs	diseases
14	esv3522847	chr6:58773602-58777174	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	30 gene(s)	inside rSNPs	diseases
15	esv4510	chr6:58773913-58779741	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
16	esv2440024	chr6:58773927-58778724	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
17	esv6861	chr6:58774124-58777928	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	51 gene(s)	inside rSNPs	diseases
18	nsv603244	chr6:58774249-58776961	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
19	esv8948	chr6:58774500-58779296	Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	60 gene(s)	inside rSNPs	diseases
20	esv5564	chr6:58774524-58778232	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	53 gene(s)	inside rSNPs	diseases
21	esv5877	chr6:58774642-58778682	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases
22	esv8678	chr6:58775025-58778770	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:58773400-58775200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:58773400-58775200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:58773400-58775200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
4	chr6:58773400-58775400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
5	chr6:58773400-58775400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr6:58773400-58775600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr6:58773400-58775600	ZNF genes & repeats	Liver	Liver
8	chr6:58773400-58775800	ZNF genes & repeats	HMEC	breast
9	chr6:58773400-58776000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:58773400-58776000	ZNF genes & repeats	NH-A	brain
11	chr6:58773400-58776200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:58773400-58776200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:58773400-58776400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:58773400-58776400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr6:58773400-58776600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
16	chr6:58773400-58776600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr6:58773400-58776600	ZNF genes & repeats	Gastric	stomach
18	chr6:58773400-58776600	ZNF genes & repeats	Small Intestine	intestine
19	chr6:58773400-58779400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
20	chr6:58773400-58779400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:58773400-58779400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:58773400-58779400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
23	chr6:58773400-58779400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
24	chr6:58773400-58779400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
25	chr6:58773400-58779400	ZNF genes & repeats	Adipose Nuclei	Adipose
26	chr6:58773400-58779400	ZNF genes & repeats	Fetal Stomach	stomach
27	chr6:58773400-58779400	ZNF genes & repeats	Left Ventricle	heart
28	chr6:58773600-58775200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:58773600-58775200	ZNF genes & repeats	HepG2	liver
30	chr6:58773600-58776600	ZNF genes & repeats	Primary T cells from cord blood	blood
31	chr6:58773600-58776600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:58773600-58779200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
33	chr6:58773600-58779400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
34	chr6:58773600-58779400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
35	chr6:58773600-58779400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
36	chr6:58773600-58779400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
37	chr6:58773600-58779400	ZNF genes & repeats	Primary B cells from cord blood	blood
38	chr6:58773600-58779400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
39	chr6:58773600-58779400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:58773600-58779400	ZNF genes & repeats	Fetal Intestine Large	intestine
41	chr6:58774000-58775200	ZNF genes & repeats	Psoas Muscle	Psoas
42	chr6:58774800-58775800	Weak transcription	HSMMtube	muscle
43	chr6:58774800-58776400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:58774800-58776400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:58774800-58776400	Weak transcription	Brain Germinal Matrix	brain
46	chr6:58774800-58776600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:58774800-58776600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:58774800-58776600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:58774800-58776600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr6:58774800-58776600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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