Variant report

Variant	rs536670784
Chromosome Location	chr1:211589266-211589267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr1:211589065-211589303	HepG2	liver:	n/a	chr1:211589154-211589167
2	CEBPB	chr1:211589066-211589316	A549	lung:	n/a	chr1:211589153-211589164
3	CEBPB	chr1:211589018-211589339	Hela-S3	cervix:	n/a	chr1:211589153-211589164
4	ARID3A	chr1:211589207-211589407	HepG2	liver:	n/a	n/a
5	FOS	chr1:211589105-211589305	MCF10A-Er-Src	breast:	n/a	n/a
6	RCOR1	chr1:211589208-211589393	Hela-S3	cervix:	n/a	n/a
7	MYC	chr1:211589110-211589541	MCF10A-Er-Src	breast:	n/a	n/a
8	CEBPB	chr1:211589119-211589336	HepG2	liver:	n/a	chr1:211589153-211589164

Variant related genes	Relation type
SNX25P1	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762141	chr1:211538685-211603843	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
2	esv1824154	chr1:211565640-211614280	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
3	esv3362349	chr1:211588754-211591702	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3433824	chr1:211589079-211591127	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211556800-211589800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211573800-211589600	Weak transcription	Ovary	ovary
3	chr1:211574000-211589600	Weak transcription	Liver	Liver
4	chr1:211580400-211589600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:211581400-211608200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr1:211581800-211589600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:211581800-211589600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:211581800-211589600	Weak transcription	Gastric	stomach
9	chr1:211581800-211590600	Weak transcription	Fetal Intestine Small	intestine
10	chr1:211585000-211589400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr1:211585400-211593200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:211587000-211589400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:211587400-211589400	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:211588800-211589400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:211589200-211589400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:211589200-211589400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:211589200-211589400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:211589200-211589400	Enhancers	Fetal Intestine Large	intestine
19	chr1:211589200-211589400	Flanking Active TSS	HepG2	liver
20	chr1:211589200-211589600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
21	chr1:211589200-211589600	Active TSS	Fetal Heart	heart
22	chr1:211589200-211589600	Active TSS	Fetal Kidney	kidney
23	chr1:211589200-211589600	Enhancers	Rectal Smooth Muscle	rectum
24	chr1:211589200-211589600	Active TSS	GM12878-XiMat	blood
25	chr1:211589200-211590200	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr1:211589200-211590400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:211589200-211590400	Enhancers	Primary B cells from cord blood	blood
28	chr1:211589200-211590400	Active TSS	Muscle Satellite Cultured Cells	--
29	chr1:211589200-211590400	Active TSS	Adipose Nuclei	Adipose
30	chr1:211589200-211590400	Active TSS	Duodenum Mucosa	Duodenum
31	chr1:211589200-211590400	Active TSS	NH-A	brain
32	chr1:211589200-211590600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:211589200-211590800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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