Variant report

Variant	rs537021993
Chromosome Location	chr10:98833304-98833305
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98832792..98833549-chr10:98877399..98877991,2	K562	blood:
2	chr10:98832501..98833370-chr10:98969951..98970951,5	K562	blood:
3	chr10:98832441..98833621-chr10:98876782..98877820,10	MCF-7	breast:
4	chr10:98832347..98833305-chr10:98969570..98970861,6	MCF-7	breast:
5	chr10:98832312..98833311-chr10:98969943..98970883,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1037576	chr10:98791099-98873649	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895912	chr10:98794615-98838694	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1039568	chr10:98800844-98868329	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1040262	chr10:98805336-98872134	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv995571	chr10:98833033-98840400	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98819400-98838400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:98826400-98835400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr10:98827200-98834000	Weak transcription	Brain Angular Gyrus	brain
4	chr10:98828400-98834400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:98832200-98835400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:98832200-98836400	Enhancers	Fetal Brain Male	brain
7	chr10:98832400-98833400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:98832400-98833400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:98832400-98835000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:98832400-98835200	Enhancers	Brain Germinal Matrix	brain
11	chr10:98832400-98836000	Enhancers	Fetal Brain Female	brain
12	chr10:98832600-98834800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr10:98832800-98835200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:98833000-98833400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:98833000-98833400	Enhancers	HMEC	breast
16	chr10:98833000-98833600	Enhancers	Brain Anterior Caudate	brain
17	chr10:98833000-98833600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr10:98833000-98833800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:98833200-98833400	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:98833200-98833400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:98833200-98834400	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:98833200-98834800	Weak transcription	Fetal Thymus	thymus
23	chr10:98833200-98839400	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links