Variant report

Variant rs537340885
Chromosome Location chr5:180261752-180261753
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:109 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:180259000-180264400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr5:180259000-180272600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr5:180259400-180262200 Weak transcription HSMMtube muscle
4 chr5:180259400-180263600 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr5:180259400-180271400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr5:180259400-180273600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr5:180259600-180262000 Weak transcription HSMM muscle
8 chr5:180259600-180264600 Weak transcription HMEC breast
9 chr5:180259600-180272400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr5:180259600-180272600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr5:180259800-180262000 Weak transcription Fetal Brain Female brain
12 chr5:180259800-180262000 Weak transcription Fetal Lung lung
13 chr5:180259800-180276800 Weak transcription Pancreatic Islets Pancreatic Islet
14 chr5:180260000-180261800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
15 chr5:180260000-180261800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr5:180260000-180261800 Weak transcription Brain Angular Gyrus brain
17 chr5:180260000-180261800 Weak transcription NHLF lung
18 chr5:180260000-180262000 Weak transcription Pancreas Pancrea
19 chr5:180260000-180264000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
20 chr5:180260000-180268800 Weak transcription Brain Germinal Matrix brain
21 chr5:180260000-180271400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr5:180260000-180273200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr5:180260000-180273800 Weak transcription Fetal Kidney kidney
24 chr5:180260000-180274400 Weak transcription Muscle Satellite Cultured Cells --
25 chr5:180260000-180274400 Weak transcription NHDF-Ad bronchial
26 chr5:180260000-180276200 Weak transcription Stomach Mucosa stomach
27 chr5:180260200-180261800 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr5:180260200-180262000 Weak transcription Psoas Muscle Psoas
29 chr5:180260200-180262000 Weak transcription Rectal Smooth Muscle rectum
30 chr5:180260200-180262200 Weak transcription Right Atrium heart
31 chr5:180260200-180263600 Weak transcription HepG2 liver
32 chr5:180260200-180264200 Weak transcription K562 blood
33 chr5:180260200-180267400 Weak transcription Fetal Heart heart
34 chr5:180260400-180263000 Genic enhancers Fetal Adrenal Gland Adrenal Gland
35 chr5:180260600-180262000 Enhancers Primary T killer naive cells fromperipheralblood blood
36 chr5:180260600-180262600 Weak transcription Fetal Brain Male brain
37 chr5:180260800-180262400 Genic enhancers Adipose Nuclei Adipose
38 chr5:180261000-180262000 Genic enhancers Primary T regulatory cells fromperipheralblood blood
39 chr5:180261000-180262200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr5:180261000-180262400 Genic enhancers Primary B cells from peripheral blood blood
41 chr5:180261000-180262400 Genic enhancers Primary T cells fromperipheralblood blood
42 chr5:180261000-180264400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr5:180261000-180264800 Strong transcription Rectal Mucosa Donor 29 rectum
44 chr5:180261000-180265000 Strong transcription Primary hematopoietic stem cells short term culture blood
45 chr5:180261000-180265400 Strong transcription Primary monocytes fromperipheralblood blood
46 chr5:180261000-180265400 Strong transcription Primary B cells from cord blood blood
47 chr5:180261000-180265400 Strong transcription Fetal Muscle Trunk muscle
48 chr5:180261000-180265400 Strong transcription Left Ventricle heart
49 chr5:180261000-180265400 Strong transcription Monocytes-CD14+_RO01746 blood
50 chr5:180261200-180261800 Genic enhancers GM12878-XiMat blood

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