Variant report

Variant	rs537441692
Chromosome Location	chr15:93571130-93571131
allele	-/TGT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93566666..93569192-chr15:93570705..93573458,2	MCF-7	breast:
2	chr15:93562018..93563938-chr15:93568930..93571732,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
3	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
4	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
6	nsv904500	chr15:93556442-93584615	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1041668	chr15:93558188-93611598	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	esv1835897	chr15:93568884-93589740	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv1052724	chr15:93569701-93622666	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv520601	chr15:93570723-93574819	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv526532	chr15:93570723-93597006	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv904501	chr15:93570723-93600158	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv904502	chr15:93570723-93600976	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
14	nsv525266	chr15:93570723-93602056	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	nsv904503	chr15:93570723-93605090	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
16	nsv523617	chr15:93570723-93610139	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93493200-93571200	Strong transcription	Rectal Mucosa Donor 29	rectum
2	chr15:93493600-93571400	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr15:93493800-93571400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:93494000-93571400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:93509600-93571200	Strong transcription	Fetal Lung	lung
6	chr15:93509600-93571400	Strong transcription	Duodenum Mucosa	Duodenum
7	chr15:93509800-93572000	Strong transcription	Fetal Intestine Large	intestine
8	chr15:93526800-93572400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:93533200-93571800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:93533200-93571800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:93534000-93572800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:93534200-93572200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:93540400-93571600	Strong transcription	Thymus	Thymus
14	chr15:93551000-93571400	Strong transcription	Fetal Stomach	stomach
15	chr15:93562200-93571600	Strong transcription	A549	lung
16	chr15:93564800-93571800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr15:93567600-93571400	Genic enhancers	Right Ventricle	heart
18	chr15:93567600-93571600	Genic enhancers	Left Ventricle	heart
19	chr15:93567600-93571800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:93567600-93572400	Strong transcription	Fetal Intestine Small	intestine
21	chr15:93567600-93572600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:93567600-93573000	Enhancers	Right Atrium	heart
23	chr15:93567800-93571600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:93567800-93571600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:93568000-93571200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr15:93568000-93571400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:93568200-93571400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:93568200-93571600	Genic enhancers	Lung	lung
29	chr15:93568200-93572000	Enhancers	Psoas Muscle	Psoas
30	chr15:93568400-93571200	Weak transcription	Fetal Brain Male	brain
31	chr15:93568400-93571600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
32	chr15:93568600-93571400	Genic enhancers	Adipose Nuclei	Adipose
33	chr15:93568600-93571800	Strong transcription	GM12878-XiMat	blood
34	chr15:93568600-93573200	Genic enhancers	Fetal Muscle Leg	muscle
35	chr15:93568800-93571600	Strong transcription	Fetal Thymus	thymus
36	chr15:93568800-93572800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr15:93568800-93574000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr15:93569000-93571200	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr15:93569000-93571400	Strong transcription	Primary T cells from cord blood	blood
40	chr15:93569000-93571600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:93569200-93571400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:93569200-93571600	Strong transcription	Primary B cells from peripheral blood	blood
43	chr15:93569400-93571400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:93569400-93571600	Genic enhancers	HSMM	muscle
45	chr15:93569400-93571800	Genic enhancers	Gastric	stomach
46	chr15:93569400-93574400	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr15:93569600-93571800	Genic enhancers	Fetal Muscle Trunk	muscle
48	chr15:93569600-93571800	Genic enhancers	Placenta	Placenta
49	chr15:93569600-93573600	Weak transcription	K562	blood
50	chr15:93569600-93574200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links