Variant report

Variant	rs537509156
Chromosome Location	chr8:51556570-51556571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv429914	chr8:51371447-51617647	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv531502	chr8:51390997-51703556	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3514165	chr8:51416583-51923545	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3514166	chr8:51416583-51923545	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv890873	chr8:51462163-51612641	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1027452	chr8:51525439-51725489	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv20833	chr8:51555987-51558277	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51554800-51556800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:51555200-51556600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr8:51555600-51556600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:51555600-51556600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:51555600-51556600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:51555600-51556600	Flanking Active TSS	HUVEC	blood vessel
7	chr8:51555800-51556600	Flanking Active TSS	Brain Germinal Matrix	brain
8	chr8:51555800-51556800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:51556000-51556800	Enhancers	Brain Cingulate Gyrus	brain
10	chr8:51556200-51556600	Enhancers	Fetal Brain Female	brain
11	chr8:51556400-51556800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:51556400-51556800	Enhancers	Fetal Muscle Leg	muscle
13	chr8:51556400-51556800	Enhancers	Spleen	Spleen
14	chr8:51556400-51557200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:51556400-51559000	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links