Variant report
| Variant | rs537541785 |
|---|---|
| Chromosome Location | chr7:53626920-53626921 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SEC61G-5 | chr7:53626907-53627111 | XLOC_006446 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948546 | chr7:53538304-54337148 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023940 | chr7:53600769-53631566 | Weak transcription Enhancers Bivalent Enhancer | lncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv538851 | chr7:53600769-53631566 | Enhancers Weak transcription Bivalent Enhancer | lncRNA | n/a | inside rSNPs | diseases |
| 4 | esv2761330 | chr7:53601598-53632542 | Enhancers Weak transcription Bivalent Enhancer | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv607024 | chr7:53602556-53628253 | Enhancers Bivalent Enhancer Weak transcription | lncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv888046 | chr7:53613811-53661764 | Enhancers Weak transcription | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
