Variant report

Variant	rs537574
Chromosome Location	chr7:78492642-78492643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1207807	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1799002	1.00[ASN][1000 genomes]
rs1799018	0.94[CEU][hapmap]
rs477641	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs480203	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518676	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs521311	0.86[MEX][hapmap]
rs554380	0.84[CEU][hapmap];0.89[GIH][hapmap];0.93[TSI][hapmap]
rs558095	0.84[CEU][hapmap]
rs561356	0.88[CEU][hapmap];0.84[GIH][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562083	1.00[CEU][hapmap]
rs572104	0.93[CEU][hapmap]
rs73135572	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949647	chr7:78406281-78495913	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78491000-78494000	Enhancers	Fetal Lung	lung
2	chr7:78491800-78493400	Enhancers	Fetal Heart	heart
3	chr7:78492000-78493000	Enhancers	Fetal Intestine Small	intestine
4	chr7:78492000-78493400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:78492200-78493000	Enhancers	NHLF	lung
6	chr7:78492200-78494200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:78492400-78493000	Enhancers	Fetal Intestine Large	intestine
8	chr7:78492400-78493800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:78492600-78493000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:78492600-78493000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:78492600-78493000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:78492600-78493000	Enhancers	Left Ventricle	heart
13	chr7:78492600-78493000	Enhancers	Right Atrium	heart
14	chr7:78492600-78493000	Enhancers	Right Ventricle	heart
15	chr7:78492600-78493800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:78492600-78493800	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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