Variant report

Variant	rs537600
Chromosome Location	chr15:40407878-40407879
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40330799..40332833-chr15:40406377..40408340,2	MCF-7	breast:
2	chr15:40400901..40404244-chr15:40406396..40409673,3	K562	blood:
3	chr15:40395962..40398718-chr15:40407616..40409672,2	K562	blood:

Variant related genes	Relation type
ENSG00000104081	Chromatin interaction
ENSG00000140319	Chromatin interaction
ENSG00000248508	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2934776	1.00[AFR][1000 genomes]
rs534838	0.88[AFR][1000 genomes]
rs58164715	1.00[AMR][1000 genomes]
rs60196164	1.00[AMR][1000 genomes]
rs60219486	1.00[AMR][1000 genomes]
rs631665	0.92[AFR][1000 genomes]
rs73388567	1.00[AMR][1000 genomes]
rs73388583	1.00[AMR][1000 genomes]
rs73388590	1.00[AMR][1000 genomes]
rs73388595	1.00[AMR][1000 genomes]
rs73388598	1.00[AMR][1000 genomes]
rs73388599	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40401800-40408000	Weak transcription	Spleen	Spleen
2	chr15:40402000-40408200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:40402000-40418600	Weak transcription	Right Atrium	heart
4	chr15:40405400-40408800	Enhancers	Primary B cells from peripheral blood	blood
5	chr15:40406000-40408600	Enhancers	Primary B cells from cord blood	blood
6	chr15:40406000-40409600	Enhancers	Fetal Thymus	thymus
7	chr15:40407200-40408200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr15:40407200-40408600	Enhancers	Primary hematopoietic stem cells	blood
9	chr15:40407200-40409200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:40407400-40411200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr15:40407600-40408200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr15:40407600-40408400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr15:40407600-40408400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:40407600-40408400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr15:40407600-40408400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:40407600-40408400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr15:40407600-40408600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:40407600-40408600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:40407600-40409200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr15:40407600-40409200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr15:40407600-40409200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:40407600-40409400	Enhancers	Thymus	Thymus
23	chr15:40407800-40408000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:40407800-40408000	Enhancers	HepG2	liver
25	chr15:40407800-40408200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:40407800-40408200	Enhancers	Duodenum Mucosa	Duodenum
27	chr15:40407800-40408200	Enhancers	Hela-S3	cervix
28	chr15:40407800-40408400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr15:40407800-40408400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr15:40407800-40408400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:40407800-40408400	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr15:40407800-40408400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr15:40407800-40408400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:40407800-40408400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr15:40407800-40408400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:40407800-40408400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:40407800-40408400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:40407800-40408400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr15:40407800-40408400	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr15:40407800-40408400	Enhancers	Pancreas	Pancrea
41	chr15:40407800-40408400	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr15:40407800-40408400	Flanking Active TSS	GM12878-XiMat	blood
43	chr15:40407800-40408400	Enhancers	NHEK	skin
44	chr15:40407800-40408600	Enhancers	H1 Cell Line	embryonic stem cell
45	chr15:40407800-40408600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:40407800-40408600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:40407800-40408600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr15:40407800-40408600	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr15:40407800-40408600	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr15:40407800-40408600	Enhancers	Primary neutrophils fromperipheralblood	blood

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