Variant report

Variant	rs60196164
Chromosome Location	chr15:40277904-40277905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs537600	1.00[AMR][1000 genomes]
rs58164715	1.00[AMR][1000 genomes]
rs60219486	1.00[AMR][1000 genomes]
rs73388567	1.00[AMR][1000 genomes]
rs73388583	1.00[AMR][1000 genomes]
rs73388590	1.00[AMR][1000 genomes]
rs73388595	1.00[AMR][1000 genomes]
rs73388598	1.00[AMR][1000 genomes]
rs73388599	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40227400-40283400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:40228200-40323800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:40236600-40303000	Weak transcription	Small Intestine	intestine
4	chr15:40249000-40304800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:40250000-40294800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr15:40250200-40299600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:40260800-40303400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:40262600-40293800	Weak transcription	Stomach Mucosa	stomach
9	chr15:40266400-40281800	Weak transcription	K562	blood
10	chr15:40266600-40278000	Weak transcription	GM12878-XiMat	blood
11	chr15:40267000-40278000	Weak transcription	Hela-S3	cervix
12	chr15:40267800-40278400	Weak transcription	Primary B cells from cord blood	blood
13	chr15:40269000-40278000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:40269000-40284800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:40269000-40293200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:40269000-40293200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:40269200-40278000	Weak transcription	Left Ventricle	heart
18	chr15:40269200-40278000	Weak transcription	Pancreas	Pancrea
19	chr15:40269200-40278000	Weak transcription	Right Ventricle	heart
20	chr15:40269200-40278200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:40269200-40282000	Weak transcription	Esophagus	oesophagus
22	chr15:40269200-40283000	Weak transcription	Psoas Muscle	Psoas
23	chr15:40269400-40278000	Weak transcription	Liver	Liver
24	chr15:40269400-40278000	Weak transcription	Brain Substantia Nigra	brain
25	chr15:40269400-40278000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:40269400-40281600	Weak transcription	Colonic Mucosa	Colon
27	chr15:40269400-40283000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:40269600-40278000	Weak transcription	Brain Germinal Matrix	brain
29	chr15:40269600-40278000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:40269600-40278000	Weak transcription	Fetal Kidney	kidney
31	chr15:40269600-40278000	Weak transcription	HepG2	liver
32	chr15:40269600-40278000	Weak transcription	HSMMtube	muscle
33	chr15:40269600-40278200	Weak transcription	Fetal Brain Female	brain
34	chr15:40269600-40282400	Weak transcription	Fetal Brain Male	brain
35	chr15:40269600-40295600	Weak transcription	Fetal Heart	heart
36	chr15:40269800-40278000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:40269800-40278000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr15:40269800-40278000	Weak transcription	NHLF	lung
39	chr15:40269800-40285400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr15:40270000-40278000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr15:40270200-40278400	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr15:40270400-40278000	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr15:40270400-40282400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr15:40271000-40278200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:40271200-40278000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:40271400-40278400	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr15:40271600-40278000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr15:40273000-40278000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:40273200-40278000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr15:40274800-40278000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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