Variant report

Variant	rs537684056
Chromosome Location	chr20:23908228-23908229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1062441	chr20:23861343-23955100	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv979494	chr20:23900040-23910180	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv979420	chr20:23906963-23909007	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23902400-23909200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23902600-23909200	Weak transcription	Fetal Thymus	thymus
3	chr20:23905400-23909200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr20:23905600-23910200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr20:23905800-23910200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr20:23906000-23910000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr20:23906400-23910200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr20:23906400-23910200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr20:23906600-23908400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr20:23907200-23908400	Enhancers	NHDF-Ad	bronchial
11	chr20:23907400-23908400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr20:23907600-23910000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr20:23907800-23908400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr20:23907800-23908400	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr20:23907800-23910200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr20:23907800-23910200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr20:23908000-23910000	Enhancers	Primary T cells from cord blood	blood
18	chr20:23908200-23909800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr20:23908200-23910000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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