Variant report

Variant	rs537833
Chromosome Location	chr2:30923729-30923730
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1252298	0.90[EUR][1000 genomes]
rs2593434	0.90[CHB][hapmap]
rs485243	0.85[EUR][1000 genomes]
rs497707	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs514940	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs528264	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs528514	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs540977	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs543134	0.88[EUR][1000 genomes]
rs544395	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs546467	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs547360	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs566241	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs578011	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs935984	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv32718	chr2:30918546-30926192	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30918600-30925000	Weak transcription	Fetal Heart	heart
3	chr2:30923600-30926200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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