Variant report

Variant	rs540977
Chromosome Location	chr2:30931709-30931710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:30883151..30886759-chr2:30927667..30934469,9	K562	blood:
2	chr2:30907737..30909883-chr2:30930032..30931732,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1252298	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs485243	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs497707	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs514940	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs528264	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs528514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs537833	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs543134	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs544395	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs546467	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs547360	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs566241	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs578011	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs935984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30902400-30954000	Weak transcription	Gastric	stomach
2	chr2:30926600-30935800	Weak transcription	Primary B cells from cord blood	blood
3	chr2:30926800-30934800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:30928800-30932000	Weak transcription	Right Atrium	heart
5	chr2:30930000-30932400	Weak transcription	Left Ventricle	heart
6	chr2:30930000-30934200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:30930000-30934400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr2:30930000-30936800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr2:30930000-30936800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:30930000-30936800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr2:30930000-30936800	Weak transcription	Osteobl	bone
12	chr2:30931200-30932000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:30931200-30932000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:30931200-30932000	Enhancers	Fetal Stomach	stomach
15	chr2:30931200-30932200	Enhancers	NHDF-Ad	bronchial
16	chr2:30931200-30933200	Enhancers	Fetal Heart	heart
17	chr2:30931400-30931800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr2:30931400-30932200	Enhancers	HSMM	muscle
19	chr2:30931400-30932200	Enhancers	NHLF	lung
20	chr2:30931400-30932800	Enhancers	Stomach Smooth Muscle	stomach
21	chr2:30931600-30932000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:30931600-30932200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:30931600-30933200	Enhancers	Right Ventricle	heart

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