Variant report

Variant rs538007041
Chromosome Location chr5:180243766-180243767
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:180238200-180245000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr5:180238600-180244000 Weak transcription HSMMtube muscle
3 chr5:180238600-180244000 Weak transcription NHLF lung
4 chr5:180238800-180243800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr5:180238800-180243800 Weak transcription iPS-20b Cell Line embryonic stem cell
6 chr5:180238800-180243800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr5:180238800-180243800 Weak transcription NHDF-Ad bronchial
8 chr5:180238800-180253200 Weak transcription A549 lung
9 chr5:180239000-180244000 Weak transcription Placenta Amnion Placenta Amnion
10 chr5:180239000-180244800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr5:180239000-180245400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr5:180239000-180247400 Weak transcription Brain Substantia Nigra brain
13 chr5:180239200-180244000 Weak transcription Pancreas Pancrea
14 chr5:180239200-180244600 Enhancers K562 blood
15 chr5:180239200-180245000 Weak transcription Colon Smooth Muscle Colon
16 chr5:180239200-180247200 Weak transcription Esophagus oesophagus
17 chr5:180240600-180245800 Enhancers Fetal Thymus thymus
18 chr5:180241400-180243800 Enhancers Primary T cells fromperipheralblood blood
19 chr5:180241400-180244200 Enhancers Fetal Muscle Trunk muscle
20 chr5:180241600-180244600 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr5:180241600-180251800 Weak transcription Brain Anterior Caudate brain
22 chr5:180242000-180243800 Enhancers Primary hematopoietic stem cells blood
23 chr5:180242000-180245000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr5:180242000-180245200 Enhancers Skeletal Muscle Male skeletal muscle
25 chr5:180242000-180245400 Enhancers Primary B cells from peripheral blood blood
26 chr5:180242200-180243800 Enhancers HUVEC blood vessel
27 chr5:180242200-180245000 Enhancers Fetal Kidney kidney
28 chr5:180242200-180245000 Enhancers Skeletal Muscle Female skeletal muscle
29 chr5:180242200-180245600 Enhancers Primary B cells from cord blood blood
30 chr5:180242200-180245600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
31 chr5:180242200-180246000 Enhancers Osteobl bone
32 chr5:180242400-180244000 Weak transcription Spleen Spleen
33 chr5:180242400-180244800 Enhancers Primary T killer memory cells from peripheral blood blood
34 chr5:180242400-180245400 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr5:180242600-180244000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr5:180242600-180244800 Weak transcription Colonic Mucosa Colon
37 chr5:180242600-180245000 Weak transcription Rectal Smooth Muscle rectum
38 chr5:180242600-180245200 Weak transcription Liver Liver
39 chr5:180242600-180245400 Weak transcription Right Ventricle heart
40 chr5:180242600-180246400 Enhancers Fetal Muscle Leg muscle
41 chr5:180242600-180247200 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr5:180242800-180244000 Weak transcription Psoas Muscle Psoas
43 chr5:180242800-180244400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
44 chr5:180242800-180246400 Enhancers Fetal Adrenal Gland Adrenal Gland
45 chr5:180243000-180244600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
46 chr5:180243000-180244600 Enhancers Primary T helper 17 cells PMA-I stimulated --
47 chr5:180243000-180245000 Enhancers Primary T killer naive cells fromperipheralblood blood
48 chr5:180243000-180245600 Enhancers Primary monocytes fromperipheralblood blood
49 chr5:180243000-180251800 Weak transcription Brain Hippocampus Middle brain
50 chr5:180243200-180244600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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