Variant report

Variant	rs538008910
Chromosome Location	chr6:140702566-140702567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140700000-140704000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:140700200-140702800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:140700400-140702600	Enhancers	Fetal Intestine Small	intestine
4	chr6:140700400-140702600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr6:140700800-140703600	Weak transcription	Placenta	Placenta
6	chr6:140701200-140702600	Enhancers	Osteobl	bone
7	chr6:140701200-140702800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:140701200-140703000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:140701400-140702600	Enhancers	Fetal Intestine Large	intestine
10	chr6:140701400-140704200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:140701600-140703800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:140701600-140703800	Enhancers	NHLF	lung
13	chr6:140701800-140702600	Enhancers	HMEC	breast
14	chr6:140702000-140702800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:140702000-140703000	Enhancers	Liver	Liver
16	chr6:140702200-140703600	Enhancers	HepG2	liver
17	chr6:140702400-140702800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:140702400-140708800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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