Variant report

Variant	rs538342986
Chromosome Location	chr11:83731669-83731670
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv898030	chr11:83730570-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83728200-83733200	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83730200-83733600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:83730400-83731800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:83730600-83732000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:83730600-83733600	Enhancers	Brain Angular Gyrus	brain
6	chr11:83730600-83734000	Enhancers	Brain Substantia Nigra	brain
7	chr11:83730600-83734400	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:83731000-83732200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:83731000-83734000	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr11:83731000-83734600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:83731200-83732200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:83731200-83733000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:83731200-83734000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:83731400-83731800	Weak transcription	Ovary	ovary
15	chr11:83731400-83732600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:83731400-83733200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:83731400-83734200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:83731600-83731800	Enhancers	Brain Germinal Matrix	brain
19	chr11:83731600-83732000	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr11:83731600-83733200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr11:83731600-83733200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:83731600-83733600	Enhancers	Duodenum Smooth Muscle	Duodenum

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