Variant report

Variant	nsv898025
Chromosome Location	chr11:83658909-83796678
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:83715504..83717050-chr11:83718239..83720670,2	K562	blood:
2	chr11:83708534..83710057-chr11:83729711..83731527,2	K562	blood:
3	chr11:83666390..83667468-chr11:83972209..83973439,4	MCF-7	breast:
4	chr11:83715504..83717050-chr11:83718239..83720670,2	K562	blood:
5	chr11:83666922..83667791-chr11:84095425..84096103,2	MCF-7	breast:
6	chr11:83654608..83655143-chr11:83665615..83666221,2	MCF-7	breast:
7	chr11:83756394..83757894-chr8:43091429..43092930,2	MCF-7	breast:
8	chr11:83793620..83796046-chr11:83800268..83802351,2	K562	blood:
9	chr11:83708534..83710057-chr11:83729711..83731527,2	K562	blood:
10	chr11:83757394..83757894-chr8:43092430..43092931,2	MCF-7	breast:

No data

Extended variants
information (count: 4584 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:4584 , 50 per page) page: 1 2 3 4 5 6 7 ... 92

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs790350	chr11:83658909-83658910	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs190290249	chr11:83658914-83658915	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs35329603	chr11:83658932-83658933	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs182107983	chr11:83658944-83658945	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs140108290	chr11:83658988-83658989	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs76551458	chr11:83658992-83658993	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs544030561	chr11:83658999-83659000	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs145520187	chr11:83659006-83659007	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs187865340	chr11:83659053-83659054	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs546345984	chr11:83659063-83659064	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs190949667	chr11:83659074-83659075	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs147588946	chr11:83659077-83659078	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs1384756	chr11:83659091-83659092	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs114810187	chr11:83659092-83659093	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs568611055	chr11:83659095-83659096	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs36003467	chr11:83659122-83659123	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs529637019	chr11:83659138-83659139	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs79612249	chr11:83659151-83659152	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs569141005	chr11:83659155-83659156	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs183955551	chr11:83659181-83659182	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs149057976	chr11:83659188-83659189	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs368940189	chr11:83659275-83659276	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs576807408	chr11:83659321-83659322	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs188851694	chr11:83659350-83659351	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs533517142	chr11:83659390-83659391	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs555346359	chr11:83659442-83659443	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs142081590	chr11:83659453-83659454	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs74913607	chr11:83659522-83659523	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs556379364	chr11:83659602-83659603	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs577882360	chr11:83659628-83659629	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs58827811	chr11:83659657-83659658	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs200590330	chr11:83659658-83659659	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs3040355	chr11:83659670-83659671	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs397966271	chr11:83659671-83659672	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs545238925	chr11:83659688-83659689	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs564531169	chr11:83659722-83659723	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs191937264	chr11:83659740-83659741	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs540260009	chr11:83659752-83659753	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs184361415	chr11:83659756-83659757	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs186835645	chr11:83659783-83659784	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs191663227	chr11:83659802-83659803	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs151138342	chr11:83659876-83659877	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs533318682	chr11:83659900-83659901	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs140407651	chr11:83659940-83659941	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs566398819	chr11:83659943-83659944	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs184131525	chr11:83659961-83659962	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs374036690	chr11:83659979-83659980	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs35099560	chr11:83660009-83660010	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs189391648	chr11:83660050-83660051	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs116316472	chr11:83660139-83660140	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Ovarian neoplasms	16753589	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	20844748	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Colorectal cancer	16912164	CNVD
Mental retardation	17847001	CNVD
Melanoma	19509136	CNVD
Sudden cardiac death	19188705	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Cancer	20164920	CNVD
Obesity	20622171	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	20164919	CNVD
Developmental delay	21147756	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:424 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83639600-83659400	Weak transcription	Ovary	ovary
3	chr11:83649200-83662400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:83650400-83662400	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:83657400-83659200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:83658400-83660200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:83658600-83660400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:83659000-83660000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:83659200-83660000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:83659200-83660000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:83659200-83660600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:83659400-83659600	Enhancers	Ovary	ovary
13	chr11:83659600-83660000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:83659600-83660000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr11:83659600-83660000	Weak transcription	Ovary	ovary
16	chr11:83660000-83662400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:83660000-83662600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:83660000-83662800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:83660000-83664200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:83660400-83662800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:83660600-83664200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:83661800-83663000	Enhancers	Brain Substantia Nigra	brain
23	chr11:83661800-83663200	Enhancers	Brain Cingulate Gyrus	brain
24	chr11:83662400-83662600	Enhancers	Brain Angular Gyrus	brain
25	chr11:83662400-83662800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:83662400-83662800	Enhancers	Brain Germinal Matrix	brain
27	chr11:83662400-83663000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:83662400-83663000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:83662400-83663000	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr11:83662400-83663000	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr11:83662400-83663200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr11:83662400-83663200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:83662400-83663200	Enhancers	Stomach Mucosa	stomach
34	chr11:83662400-83663400	Enhancers	Brain Hippocampus Middle	brain
35	chr11:83662600-83662800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:83662600-83663000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr11:83662600-83676200	Weak transcription	Brain Angular Gyrus	brain
38	chr11:83662800-83663000	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr11:83662800-83663000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:83662800-83663400	Enhancers	Fetal Lung	lung
41	chr11:83662800-83667800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:83663000-83675800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr11:83663000-83676000	Weak transcription	Brain Substantia Nigra	brain
44	chr11:83663200-83663600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr11:83663200-83676000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr11:83663400-83665600	Weak transcription	Fetal Lung	lung
47	chr11:83663400-83675600	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:83663600-83664000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:83664000-83664600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr11:83664000-83666400	Weak transcription	Gastric	stomach

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