Variant report

Variant	rs790350
Chromosome Location	chr11:83658909-83658910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1118277	0.83[JPT][hapmap]
rs12418356	0.83[JPT][hapmap]
rs1384749	0.83[JPT][hapmap]
rs1384757	1.00[CHB][hapmap];0.92[CHD][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs1384758	1.00[ASW][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1483386	0.83[JPT][hapmap]
rs1483411	0.90[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs1545863	0.83[JPT][hapmap]
rs1545864	0.83[JPT][hapmap]
rs1601091	0.83[JPT][hapmap]
rs1982733	0.83[JPT][hapmap]
rs2200204	0.83[JPT][hapmap]
rs2449589	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2449590	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs2449593	0.90[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2449596	0.83[JPT][hapmap]
rs2449597	0.83[JPT][hapmap]
rs2449599	0.83[JPT][hapmap]
rs2449600	0.83[JPT][hapmap]
rs2514145	0.83[JPT][hapmap]
rs2514147	0.83[JPT][hapmap]
rs2514149	0.83[JPT][hapmap];0.84[MEX][hapmap]
rs2514150	0.82[ASN][1000 genomes]
rs2514151	0.82[ASN][1000 genomes]
rs2514152	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs2514154	0.80[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514155	0.83[JPT][hapmap]
rs2514159	0.83[JPT][hapmap]
rs2514160	0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs2514161	0.90[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2514162	0.90[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs708240	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs708241	1.00[ASW][hapmap];0.82[GIH][hapmap];0.95[LWK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs790349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs790364	0.95[CHB][hapmap];0.92[CHD][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs790365	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs960532	0.90[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83639600-83659400	Weak transcription	Ovary	ovary
3	chr11:83649200-83662400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:83650400-83662400	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:83657400-83659200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:83658400-83660200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:83658600-83660400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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