Variant report

Variant	rs2449596
Chromosome Location	chr11:83692950-83692951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10792700	0.98[ASN][1000 genomes]
rs10792712	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10898199	0.82[CEU][hapmap]
rs1118277	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11602701	0.82[CEU][hapmap]
rs12418356	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12574301	0.82[CEU][hapmap]
rs12577433	0.82[CEU][hapmap]
rs12806160	0.81[EUR][1000 genomes]
rs1384749	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1384757	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1384758	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1483386	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1483411	0.82[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1540188	1.00[CEU][hapmap]
rs1545863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1545864	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1573570	1.00[CEU][hapmap]
rs1601091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1601092	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1601093	0.91[ASN][1000 genomes]
rs1894171	0.82[CEU][hapmap]
rs1945802	0.85[EUR][1000 genomes]
rs1945803	0.85[EUR][1000 genomes]
rs1945804	0.85[EUR][1000 genomes]
rs1945815	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1945817	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1982733	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2200204	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2374466	0.98[ASN][1000 genomes]
rs2449584	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2449589	0.81[ASN][1000 genomes]
rs2449590	0.81[ASN][1000 genomes]
rs2449593	0.83[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2449595	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2449597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2449599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2449600	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2514143	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2514145	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2514147	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514148	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514149	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2514150	0.91[ASN][1000 genomes]
rs2514151	0.91[ASN][1000 genomes]
rs2514152	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2514154	0.81[JPT][hapmap]
rs2514155	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2514159	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2514160	0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs2514161	0.83[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2514162	0.82[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2514172	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2625510	1.00[CEU][hapmap]
rs2625514	1.00[CEU][hapmap]
rs2853022	1.00[CEU][hapmap]
rs2853023	1.00[CEU][hapmap]
rs2853024	0.85[EUR][1000 genomes]
rs3905309	0.82[CEU][hapmap]
rs7107725	0.92[ASN][1000 genomes]
rs790349	0.89[JPT][hapmap]
rs790350	0.83[JPT][hapmap]
rs790365	0.83[JPT][hapmap]
rs7924476	0.82[CEU][hapmap]
rs7924503	0.82[CEU][hapmap]
rs7924835	0.82[CEU][hapmap]
rs7927619	0.82[CEU][hapmap]
rs7928752	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7934123	0.82[ASN][1000 genomes]
rs7952399	1.00[CEU][hapmap]
rs960532	0.82[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83687600-83693000	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83691600-83693800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:83691600-83701200	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83692200-83693000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83692200-83693800	Weak transcription	Brain Inferior Temporal Lobe	brain

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