Variant report

Variant	rs2514150
Chromosome Location	chr11:83678018-83678019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10792700	0.91[ASN][1000 genomes]
rs1384749	0.84[ASN][1000 genomes]
rs1384757	0.88[ASN][1000 genomes]
rs1384758	0.91[ASN][1000 genomes]
rs1483411	0.99[ASN][1000 genomes]
rs1545863	0.86[ASN][1000 genomes]
rs1545864	0.89[ASN][1000 genomes]
rs1601091	0.85[ASN][1000 genomes]
rs1601093	0.84[ASN][1000 genomes]
rs1982733	0.93[ASN][1000 genomes]
rs2200204	0.90[ASN][1000 genomes]
rs2374466	0.88[ASN][1000 genomes]
rs2449584	0.84[ASN][1000 genomes]
rs2449589	0.86[ASN][1000 genomes]
rs2449590	0.86[ASN][1000 genomes]
rs2449593	0.98[ASN][1000 genomes]
rs2449595	0.90[ASN][1000 genomes]
rs2449596	0.91[ASN][1000 genomes]
rs2449597	0.93[ASN][1000 genomes]
rs2449599	0.90[ASN][1000 genomes]
rs2449600	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2514143	0.92[ASN][1000 genomes]
rs2514145	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2514147	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514148	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514149	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514151	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514152	0.89[ASN][1000 genomes]
rs2514154	0.82[ASN][1000 genomes]
rs2514159	0.85[ASN][1000 genomes]
rs2514160	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2514161	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2514162	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2514172	0.93[ASN][1000 genomes]
rs708240	0.83[ASN][1000 genomes]
rs708241	0.83[ASN][1000 genomes]
rs7107725	0.84[ASN][1000 genomes]
rs790349	0.82[ASN][1000 genomes]
rs790350	0.82[ASN][1000 genomes]
rs790365	0.83[ASN][1000 genomes]
rs960532	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83667400-83681000	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83676400-83681800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:83677000-83678200	Enhancers	Brain Cingulate Gyrus	brain
4	chr11:83677000-83678800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83677600-83678400	Weak transcription	Brain Angular Gyrus	brain
6	chr11:83677600-83678800	Weak transcription	Brain Substantia Nigra	brain
7	chr11:83678000-83678200	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links