Variant report

Variant	rs10792700
Chromosome Location	chr11:83691458-83691459
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1384749	0.88[ASN][1000 genomes]
rs1384757	0.83[ASN][1000 genomes]
rs1384758	0.84[ASN][1000 genomes]
rs1483411	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1545863	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1545864	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1601091	0.91[ASN][1000 genomes]
rs1601093	0.89[ASN][1000 genomes]
rs1982733	0.98[ASN][1000 genomes]
rs2200204	0.92[ASN][1000 genomes]
rs2374466	0.97[ASN][1000 genomes]
rs2449584	0.89[ASN][1000 genomes]
rs2449589	0.81[ASN][1000 genomes]
rs2449593	0.92[ASN][1000 genomes]
rs2449595	0.98[ASN][1000 genomes]
rs2449596	0.98[ASN][1000 genomes]
rs2449597	0.98[ASN][1000 genomes]
rs2449599	0.95[ASN][1000 genomes]
rs2449600	0.91[ASN][1000 genomes]
rs2514143	0.99[ASN][1000 genomes]
rs2514145	0.98[ASN][1000 genomes]
rs2514147	0.98[ASN][1000 genomes]
rs2514148	0.98[ASN][1000 genomes]
rs2514149	0.98[ASN][1000 genomes]
rs2514150	0.91[ASN][1000 genomes]
rs2514151	0.91[ASN][1000 genomes]
rs2514152	0.84[ASN][1000 genomes]
rs2514159	0.87[ASN][1000 genomes]
rs2514160	0.91[ASN][1000 genomes]
rs2514161	0.91[ASN][1000 genomes]
rs2514162	0.91[ASN][1000 genomes]
rs2514172	0.95[ASN][1000 genomes]
rs7107725	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs960532	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83683800-83692000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:83687600-83693000	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83688400-83692000	Weak transcription	Brain Anterior Caudate	brain
4	chr11:83689800-83692200	Enhancers	Fetal Heart	heart
5	chr11:83690400-83691600	Enhancers	Brain Hippocampus Middle	brain
6	chr11:83690600-83691600	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:83690600-83692200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:83690600-83692200	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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