Variant report

Variant	rs2374466
Chromosome Location	chr11:83692732-83692733
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10501553	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10792700	0.97[ASN][1000 genomes]
rs10792711	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11233890	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1384749	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1384757	0.82[ASN][1000 genomes]
rs1384758	0.83[ASN][1000 genomes]
rs1483384	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1483411	0.89[ASN][1000 genomes]
rs1545863	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1545864	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1601091	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1601093	0.89[ASN][1000 genomes]
rs1945805	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1945811	0.82[EUR][1000 genomes]
rs1945813	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1945814	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1982733	0.95[ASN][1000 genomes]
rs2200204	0.89[ASN][1000 genomes]
rs2449584	0.89[ASN][1000 genomes]
rs2449593	0.91[ASN][1000 genomes]
rs2449595	0.98[ASN][1000 genomes]
rs2449596	0.98[ASN][1000 genomes]
rs2449597	0.95[ASN][1000 genomes]
rs2449599	0.95[ASN][1000 genomes]
rs2449600	0.88[ASN][1000 genomes]
rs2514143	0.96[ASN][1000 genomes]
rs2514145	0.98[ASN][1000 genomes]
rs2514147	0.98[ASN][1000 genomes]
rs2514148	0.98[ASN][1000 genomes]
rs2514149	0.95[ASN][1000 genomes]
rs2514150	0.88[ASN][1000 genomes]
rs2514151	0.88[ASN][1000 genomes]
rs2514152	0.82[ASN][1000 genomes]
rs2514159	0.85[ASN][1000 genomes]
rs2514160	0.89[ASN][1000 genomes]
rs2514161	0.89[ASN][1000 genomes]
rs2514162	0.89[ASN][1000 genomes]
rs2514172	0.92[ASN][1000 genomes]
rs34555244	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4944460	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7107725	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7934123	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs960532	0.88[ASN][1000 genomes]
rs963146	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83687600-83693000	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83691600-83693800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:83691600-83701200	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83692200-83693000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83692200-83693800	Weak transcription	Brain Inferior Temporal Lobe	brain

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