Variant report

Variant	rs963146
Chromosome Location	chr11:83745796-83745797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10501552	0.84[YRI][hapmap]
rs10501553	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751104	0.80[CHB][hapmap]
rs10792705	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10792707	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10792710	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10792711	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792712	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10792713	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs10792716	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs10792717	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs10792718	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs10898192	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10898194	0.96[ASN][1000 genomes]
rs10898199	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs10898202	0.84[CHB][hapmap]
rs10898205	0.80[CHB][hapmap]
rs10898206	0.80[CHB][hapmap]
rs10898207	0.80[CHB][hapmap]
rs11233881	0.94[CEU][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233890	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11233900	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs11602701	0.81[ASN][1000 genomes]
rs12285610	0.84[CHD][hapmap];0.87[JPT][hapmap]
rs12363188	0.84[CHB][hapmap]
rs12418356	0.94[CEU][hapmap]
rs12574301	0.93[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs12575314	0.81[ASN][1000 genomes]
rs12577433	0.83[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs12806160	0.93[ASN][1000 genomes]
rs1384749	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1384751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.97[TSI][hapmap]
rs1483384	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1483386	0.94[CEU][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap]
rs1483389	0.81[ASW][hapmap];0.84[YRI][hapmap]
rs1483398	1.00[CEU][hapmap]
rs1483411	0.89[MEX][hapmap]
rs1540188	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1545863	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1545864	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1573570	0.89[CHB][hapmap]
rs1573574	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs1601091	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1601095	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs1894169	0.80[CHB][hapmap]
rs1894170	0.80[CHB][hapmap]
rs1894171	0.89[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs1894172	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs1945799	0.84[CHB][hapmap]
rs1945800	0.89[CHB][hapmap]
rs1945801	0.89[CHB][hapmap]
rs1945802	0.98[ASN][1000 genomes]
rs1945803	0.98[ASN][1000 genomes]
rs1945804	0.96[ASN][1000 genomes]
rs1945805	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1945807	0.83[CHB][hapmap]
rs1945809	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1945811	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1945812	0.84[ASN][1000 genomes]
rs1945813	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1945814	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];0.92[LWK][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1945815	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1945816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1945817	0.96[ASN][1000 genomes]
rs1945828	0.80[CHB][hapmap]
rs1945832	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs1984374	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs2032401	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs2051472	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs2213111	0.85[EUR][1000 genomes]
rs2298830	0.84[CHB][hapmap]
rs2374466	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2514168	0.83[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs2625510	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2625514	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2625518	0.94[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[ASN][1000 genomes]
rs2853022	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2853023	0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs2853024	1.00[ASN][1000 genomes]
rs34555244	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3905309	0.89[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs4373957	0.85[ASN][1000 genomes]
rs4421763	0.94[ASN][1000 genomes]
rs4528354	0.96[ASN][1000 genomes]
rs4586191	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4943885	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs4943886	0.89[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs4944457	0.81[ASW][hapmap];0.80[LWK][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs4944459	0.82[ASN][1000 genomes]
rs4944460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944461	0.89[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs4944462	0.81[ASN][1000 genomes]
rs4944463	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4944464	0.89[CHB][hapmap]
rs6592163	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs7103649	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7107725	0.90[EUR][1000 genomes]
rs7108582	0.80[CHB][hapmap]
rs7109671	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs7114926	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs7924360	0.81[ASN][1000 genomes]
rs7924443	0.81[ASN][1000 genomes]
rs7924476	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs7924503	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs7924835	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs7927039	0.80[CHB][hapmap]
rs7927619	0.89[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs7928752	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs7929774	0.86[CHB][hapmap]
rs7934123	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7935399	0.84[CHB][hapmap]
rs7952171	0.81[ASN][1000 genomes]
rs7952399	0.88[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7952517	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv898030	chr11:83730570-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv1806027	chr11:83740599-83775326	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83745600-83746200	Enhancers	Rectal Smooth Muscle	rectum
2	chr11:83745600-83746800	Enhancers	Stomach Smooth Muscle	stomach

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