Variant report

Variant	rs2625514
Chromosome Location	chr11:83744555-83744556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10501553	1.00[ASN][1000 genomes]
rs10792705	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10792707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10792710	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10792711	1.00[ASN][1000 genomes]
rs10792712	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10792713	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10792716	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs10792717	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10792718	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10898192	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10898194	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10898195	0.84[EUR][1000 genomes]
rs10898198	0.86[EUR][1000 genomes]
rs10898199	0.82[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10898202	0.81[CHB][hapmap]
rs11233879	0.89[YRI][hapmap]
rs11233881	0.93[ASN][1000 genomes]
rs11233890	0.94[ASN][1000 genomes]
rs11233900	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs11602701	0.82[CEU][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12285610	0.87[JPT][hapmap]
rs12363188	0.80[CHB][hapmap]
rs12574301	0.82[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12575314	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12577433	0.82[CEU][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12806160	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1384751	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1483384	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1540188	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1573569	0.86[EUR][1000 genomes]
rs1573570	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[EUR][1000 genomes]
rs1573571	0.86[EUR][1000 genomes]
rs1573574	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1601092	1.00[CEU][hapmap]
rs1601095	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1894171	0.82[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1894172	0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs1945799	0.80[CHB][hapmap]
rs1945800	0.85[CHB][hapmap]
rs1945801	0.85[CHB][hapmap]
rs1945802	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1945803	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1945804	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1945805	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1945809	0.90[ASN][1000 genomes]
rs1945811	0.86[ASN][1000 genomes]
rs1945812	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1945813	0.93[ASN][1000 genomes]
rs1945814	0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs1945815	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1945816	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1945817	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1945832	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1984374	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2032401	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2051472	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs2298830	0.80[CHB][hapmap]
rs2449584	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2449595	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2449596	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2449599	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2514143	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2514145	0.89[YRI][hapmap]
rs2514149	0.82[CEU][hapmap]
rs2514155	0.89[YRI][hapmap]
rs2514159	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2514168	1.00[JPT][hapmap]
rs2625510	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2625518	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2853022	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs2853023	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2853024	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34555244	0.96[ASN][1000 genomes]
rs3905309	0.82[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4322419	0.85[EUR][1000 genomes]
rs4373957	0.85[ASN][1000 genomes]
rs4421763	0.94[ASN][1000 genomes]
rs4528354	0.96[ASN][1000 genomes]
rs4586191	0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4943885	0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4943886	0.85[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4944459	0.82[ASN][1000 genomes]
rs4944460	0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4944461	0.85[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4944462	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4944463	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4944464	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs6592158	0.81[EUR][1000 genomes]
rs6592159	0.85[EUR][1000 genomes]
rs6592163	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7103649	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs7108711	0.85[EUR][1000 genomes]
rs7109671	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7114926	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7122677	0.85[EUR][1000 genomes]
rs7122855	0.85[EUR][1000 genomes]
rs7122967	0.85[EUR][1000 genomes]
rs7123054	0.85[EUR][1000 genomes]
rs7126268	0.85[EUR][1000 genomes]
rs7924360	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7924443	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7924476	0.82[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7924503	0.82[CEU][hapmap];0.85[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7924835	0.82[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs7927619	0.82[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7928752	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7929774	0.81[CHB][hapmap]
rs7935399	0.81[CHB][hapmap]
rs7952161	0.85[EUR][1000 genomes]
rs7952171	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7952399	1.00[CEU][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7952517	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs963146	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv898030	chr11:83730570-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv1806027	chr11:83740599-83775326	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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