Variant report

Variant	rs2449584
Chromosome Location	chr11:83714909-83714910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10792700	0.89[ASN][1000 genomes]
rs10792712	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10898195	0.82[EUR][1000 genomes]
rs10898198	0.84[EUR][1000 genomes]
rs11602701	0.83[EUR][1000 genomes]
rs12574301	0.83[EUR][1000 genomes]
rs12575314	0.83[EUR][1000 genomes]
rs12577433	0.83[EUR][1000 genomes]
rs12806160	0.92[EUR][1000 genomes]
rs1384749	0.94[ASN][1000 genomes]
rs1483411	0.84[ASN][1000 genomes]
rs1545863	0.96[ASN][1000 genomes]
rs1545864	0.93[ASN][1000 genomes]
rs1573569	0.84[EUR][1000 genomes]
rs1573570	0.84[EUR][1000 genomes]
rs1573571	0.84[EUR][1000 genomes]
rs1601091	0.98[ASN][1000 genomes]
rs1601093	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1894171	0.83[EUR][1000 genomes]
rs1894172	0.83[EUR][1000 genomes]
rs1945802	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1945803	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1945804	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1945815	0.97[EUR][1000 genomes]
rs1945817	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1982733	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2200204	0.92[ASN][1000 genomes]
rs2374466	0.89[ASN][1000 genomes]
rs2449593	0.84[ASN][1000 genomes]
rs2449595	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2449596	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2449597	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2449599	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2449600	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2514143	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2514145	0.91[ASN][1000 genomes]
rs2514147	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2514148	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2514149	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2514150	0.84[ASN][1000 genomes]
rs2514151	0.84[ASN][1000 genomes]
rs2514159	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2514160	0.84[ASN][1000 genomes]
rs2514161	0.83[ASN][1000 genomes]
rs2514162	0.84[ASN][1000 genomes]
rs2514168	0.85[AMR][1000 genomes]
rs2514172	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2853024	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3905309	0.83[EUR][1000 genomes]
rs4322419	0.83[EUR][1000 genomes]
rs4943886	0.83[EUR][1000 genomes]
rs4944461	0.83[EUR][1000 genomes]
rs4944462	0.83[EUR][1000 genomes]
rs6592159	0.83[EUR][1000 genomes]
rs7107725	0.85[ASN][1000 genomes]
rs7108711	0.83[EUR][1000 genomes]
rs7122677	0.83[EUR][1000 genomes]
rs7122855	0.83[EUR][1000 genomes]
rs7122967	0.83[EUR][1000 genomes]
rs7123054	0.83[EUR][1000 genomes]
rs7126268	0.83[EUR][1000 genomes]
rs7924360	0.82[EUR][1000 genomes]
rs7924443	0.83[EUR][1000 genomes]
rs7924476	0.83[EUR][1000 genomes]
rs7924503	0.83[EUR][1000 genomes]
rs7924835	0.83[EUR][1000 genomes]
rs7927619	0.83[EUR][1000 genomes]
rs7928752	0.97[EUR][1000 genomes]
rs7952161	0.83[EUR][1000 genomes]
rs7952171	0.83[EUR][1000 genomes]
rs7952399	0.83[EUR][1000 genomes]
rs7952517	0.82[EUR][1000 genomes]
rs960532	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83714800-83723200	Weak transcription	Brain Hippocampus Middle	brain

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