Variant report

Variant	rs7126268
Chromosome Location	chr11:83777025-83777026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10792712	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10792713	0.97[ASN][1000 genomes]
rs10792714	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10792715	0.97[ASN][1000 genomes]
rs10792716	0.97[ASN][1000 genomes]
rs10792717	0.95[ASN][1000 genomes]
rs10792718	0.97[ASN][1000 genomes]
rs10898194	0.82[ASN][1000 genomes]
rs10898195	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898196	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898197	0.91[ASN][1000 genomes]
rs10898198	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898202	0.87[ASN][1000 genomes]
rs11233890	0.81[ASN][1000 genomes]
rs11233894	0.87[ASN][1000 genomes]
rs11233900	0.97[ASN][1000 genomes]
rs11602701	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12363188	0.85[ASN][1000 genomes]
rs12574301	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12575314	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12577433	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12806160	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1573569	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1573570	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1573571	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1573574	0.97[ASN][1000 genomes]
rs1894171	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1894172	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1945799	0.87[ASN][1000 genomes]
rs1945800	0.92[ASN][1000 genomes]
rs1945801	0.88[ASN][1000 genomes]
rs1945802	0.85[EUR][1000 genomes]
rs1945803	0.85[EUR][1000 genomes]
rs1945804	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1945805	0.82[ASN][1000 genomes]
rs1945809	0.88[ASN][1000 genomes]
rs1945813	0.85[ASN][1000 genomes]
rs1945814	0.87[ASN][1000 genomes]
rs1945815	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1945816	0.82[ASN][1000 genomes]
rs1945817	0.85[EUR][1000 genomes]
rs1945830	0.97[ASN][1000 genomes]
rs1945832	0.99[ASN][1000 genomes]
rs1984374	0.97[ASN][1000 genomes]
rs2032401	0.97[ASN][1000 genomes]
rs2051472	0.97[ASN][1000 genomes]
rs2449584	0.83[EUR][1000 genomes]
rs2514159	0.82[EUR][1000 genomes]
rs2853024	0.85[EUR][1000 genomes]
rs34555244	0.82[ASN][1000 genomes]
rs3750917	0.87[ASN][1000 genomes]
rs3905309	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4322419	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421763	0.81[ASN][1000 genomes]
rs4528354	0.82[ASN][1000 genomes]
rs4586191	0.85[ASN][1000 genomes]
rs4943885	0.85[ASN][1000 genomes]
rs4943886	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4943887	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4944460	0.85[ASN][1000 genomes]
rs4944461	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944462	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944463	0.97[ASN][1000 genomes]
rs4944464	0.97[ASN][1000 genomes]
rs6592158	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592159	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592163	0.97[ASN][1000 genomes]
rs7108711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109671	0.92[ASN][1000 genomes]
rs7114926	0.97[ASN][1000 genomes]
rs7122677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122967	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123054	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7924360	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7924443	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7924476	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7924503	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7924835	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7927619	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7928752	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7929774	0.97[ASN][1000 genomes]
rs7935399	0.87[ASN][1000 genomes]
rs7936419	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7951507	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7952161	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7952171	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7952399	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7952517	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv898030	chr11:83730570-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83772400-83780200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83773600-83781000	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83777000-83777200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links