Variant report

Variant	rs1945802
Chromosome Location	chr11:83755480-83755481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10501553	0.98[ASN][1000 genomes]
rs10792711	0.98[ASN][1000 genomes]
rs10792712	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10898194	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10898195	0.84[EUR][1000 genomes]
rs10898198	0.86[EUR][1000 genomes]
rs11233881	0.91[ASN][1000 genomes]
rs11233890	0.94[ASN][1000 genomes]
rs11602701	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12574301	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12575314	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12577433	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12806160	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1483384	0.97[ASN][1000 genomes]
rs1573569	0.86[EUR][1000 genomes]
rs1573570	0.86[EUR][1000 genomes]
rs1573571	0.86[EUR][1000 genomes]
rs1894171	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1894172	0.85[EUR][1000 genomes]
rs1945803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945804	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1945805	0.96[ASN][1000 genomes]
rs1945809	0.90[ASN][1000 genomes]
rs1945811	0.86[ASN][1000 genomes]
rs1945812	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1945813	0.93[ASN][1000 genomes]
rs1945814	0.92[ASN][1000 genomes]
rs1945815	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1945816	0.96[ASN][1000 genomes]
rs1945817	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2449584	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2449595	0.85[EUR][1000 genomes]
rs2449596	0.85[EUR][1000 genomes]
rs2449599	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2514143	0.85[EUR][1000 genomes]
rs2514159	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2514168	0.81[ASN][1000 genomes]
rs2625518	0.98[ASN][1000 genomes]
rs2853024	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34555244	0.96[ASN][1000 genomes]
rs3905309	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4322419	0.85[EUR][1000 genomes]
rs4373957	0.85[ASN][1000 genomes]
rs4421763	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4528354	0.96[ASN][1000 genomes]
rs4586191	0.93[ASN][1000 genomes]
rs4943885	0.93[ASN][1000 genomes]
rs4943886	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4944459	0.82[ASN][1000 genomes]
rs4944460	0.93[ASN][1000 genomes]
rs4944461	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4944462	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6592158	0.81[EUR][1000 genomes]
rs6592159	0.85[EUR][1000 genomes]
rs7108711	0.85[EUR][1000 genomes]
rs7122677	0.85[EUR][1000 genomes]
rs7122855	0.85[EUR][1000 genomes]
rs7122967	0.85[EUR][1000 genomes]
rs7123054	0.85[EUR][1000 genomes]
rs7126268	0.85[EUR][1000 genomes]
rs7924360	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7924443	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7924476	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7924503	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7924835	0.85[EUR][1000 genomes]
rs7927619	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7928752	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7952161	0.85[EUR][1000 genomes]
rs7952171	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7952399	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7952517	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs963146	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv898030	chr11:83730570-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv1806027	chr11:83740599-83775326	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83755200-83764000	Weak transcription	Brain Substantia Nigra	brain
2	chr11:83755400-83755800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links