Variant report

Variant	rs1945817
Chromosome Location	chr11:83733792-83733793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10501553	0.96[ASN][1000 genomes]
rs10792711	0.96[ASN][1000 genomes]
rs10792712	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10898187	0.81[AFR][1000 genomes]
rs10898194	0.93[ASN][1000 genomes]
rs10898195	0.84[EUR][1000 genomes]
rs10898198	0.86[EUR][1000 genomes]
rs11233881	0.96[ASN][1000 genomes]
rs11233890	0.91[ASN][1000 genomes]
rs11602701	0.85[EUR][1000 genomes]
rs12574301	0.85[EUR][1000 genomes]
rs12575314	0.85[EUR][1000 genomes]
rs12577433	0.85[EUR][1000 genomes]
rs12806160	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1483384	0.95[ASN][1000 genomes]
rs1573569	0.86[EUR][1000 genomes]
rs1573570	0.86[EUR][1000 genomes]
rs1573571	0.86[EUR][1000 genomes]
rs1601093	0.83[AMR][1000 genomes]
rs1894171	0.85[EUR][1000 genomes]
rs1894172	0.85[EUR][1000 genomes]
rs1945802	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945803	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945804	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1945805	0.93[ASN][1000 genomes]
rs1945809	0.86[ASN][1000 genomes]
rs1945811	0.82[ASN][1000 genomes]
rs1945812	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1945813	0.90[ASN][1000 genomes]
rs1945814	0.88[ASN][1000 genomes]
rs1945815	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1945816	0.93[ASN][1000 genomes]
rs1982733	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2449584	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2449595	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2449596	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2449597	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2449599	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2449600	0.85[AMR][1000 genomes]
rs2514143	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2514149	0.81[AFR][1000 genomes]
rs2514159	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2514168	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2514172	0.81[AMR][1000 genomes]
rs2625518	0.96[ASN][1000 genomes]
rs2853024	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34555244	0.93[ASN][1000 genomes]
rs3905309	0.85[EUR][1000 genomes]
rs4322419	0.85[EUR][1000 genomes]
rs4373957	0.82[ASN][1000 genomes]
rs4421763	0.91[ASN][1000 genomes]
rs4528354	0.93[ASN][1000 genomes]
rs4586191	0.90[ASN][1000 genomes]
rs4943885	0.90[ASN][1000 genomes]
rs4943886	0.85[EUR][1000 genomes]
rs4944460	0.90[ASN][1000 genomes]
rs4944461	0.85[EUR][1000 genomes]
rs4944462	0.85[EUR][1000 genomes]
rs6592158	0.81[EUR][1000 genomes]
rs6592159	0.85[EUR][1000 genomes]
rs7108711	0.85[EUR][1000 genomes]
rs7122677	0.85[EUR][1000 genomes]
rs7122855	0.85[EUR][1000 genomes]
rs7122967	0.85[EUR][1000 genomes]
rs7123054	0.85[EUR][1000 genomes]
rs7126268	0.85[EUR][1000 genomes]
rs7924360	0.84[EUR][1000 genomes]
rs7924443	0.85[EUR][1000 genomes]
rs7924476	0.85[EUR][1000 genomes]
rs7924503	0.85[EUR][1000 genomes]
rs7924835	0.85[EUR][1000 genomes]
rs7927619	0.85[EUR][1000 genomes]
rs7928752	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7952161	0.85[EUR][1000 genomes]
rs7952171	0.85[EUR][1000 genomes]
rs7952399	0.85[EUR][1000 genomes]
rs7952517	0.84[EUR][1000 genomes]
rs963146	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv898030	chr11:83730570-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83730600-83734000	Enhancers	Brain Substantia Nigra	brain
2	chr11:83730600-83734400	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:83731000-83734000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr11:83731000-83734600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:83731200-83734000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:83731400-83734200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:83731800-83734200	Enhancers	Colon Smooth Muscle	Colon
8	chr11:83732000-83734000	Enhancers	Brain Anterior Caudate	brain
9	chr11:83732200-83734400	Enhancers	Rectal Smooth Muscle	rectum
10	chr11:83732400-83734200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:83732400-83734400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:83732600-83733800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr11:83732600-83734000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:83733000-83733800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:83733000-83734000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:83733000-83734400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:83733000-83734400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr11:83733200-83734000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:83733200-83734000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:83733600-83733800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr11:83733600-83734400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr11:83733600-83734400	Enhancers	Brain Hippocampus Middle	brain
23	chr11:83733600-83734600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:83733600-83736200	Weak transcription	Brain Angular Gyrus	brain

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