Variant report

Variant	rs11233881
Chromosome Location	chr11:83731540-83731541
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10501552	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10501553	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10792704	0.81[YRI][hapmap]
rs10792705	0.94[CEU][hapmap]
rs10792707	0.89[CEU][hapmap];0.90[YRI][hapmap]
rs10792710	0.94[CEU][hapmap]
rs10792711	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10792712	0.89[ASN][1000 genomes]
rs10898194	0.89[ASN][1000 genomes]
rs11233890	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12418356	1.00[CEU][hapmap]
rs12806160	0.86[ASN][1000 genomes]
rs1384749	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs1384751	0.94[CEU][hapmap]
rs1483384	0.94[CEU][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1483386	1.00[CEU][hapmap]
rs1483389	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1483398	0.94[CEU][hapmap]
rs1545863	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs1545864	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1601091	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs1601095	0.94[CEU][hapmap]
rs1945802	0.91[ASN][1000 genomes]
rs1945803	0.91[ASN][1000 genomes]
rs1945804	0.89[ASN][1000 genomes]
rs1945805	0.94[CEU][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1945809	0.82[ASN][1000 genomes]
rs1945811	0.83[EUR][1000 genomes]
rs1945813	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1945814	0.94[CEU][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1945815	0.89[ASN][1000 genomes]
rs1945816	0.89[ASN][1000 genomes]
rs1945817	0.96[ASN][1000 genomes]
rs2514168	0.81[ASN][1000 genomes]
rs2625518	0.93[ASN][1000 genomes]
rs2853024	0.93[ASN][1000 genomes]
rs34555244	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4421763	0.87[ASN][1000 genomes]
rs4528354	0.89[ASN][1000 genomes]
rs4586191	0.86[ASN][1000 genomes]
rs4943885	0.86[ASN][1000 genomes]
rs4944457	0.90[YRI][hapmap]
rs4944460	0.93[CEU][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7107725	0.81[EUR][1000 genomes]
rs7115971	0.81[AFR][1000 genomes]
rs7928752	0.86[ASN][1000 genomes]
rs963146	0.94[CEU][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv898030	chr11:83730570-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83728200-83733200	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83730200-83733600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:83730400-83731800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:83730600-83732000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:83730600-83733600	Enhancers	Brain Angular Gyrus	brain
6	chr11:83730600-83734000	Enhancers	Brain Substantia Nigra	brain
7	chr11:83730600-83734400	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:83730800-83731600	Enhancers	Brain Anterior Caudate	brain
9	chr11:83731000-83732200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:83731000-83734000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:83731000-83734600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:83731200-83731600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:83731200-83732200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:83731200-83733000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:83731200-83734000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:83731400-83731600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:83731400-83731800	Weak transcription	Ovary	ovary
18	chr11:83731400-83732600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:83731400-83733200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:83731400-83734200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links