Variant report

Variant	rs1483389
Chromosome Location	chr11:83733136-83733137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10501552	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10792703	0.89[CEU][hapmap];0.80[CHD][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10792704	0.94[CEU][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10792707	0.88[YRI][hapmap]
rs10898190	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11233881	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1483384	0.88[YRI][hapmap]
rs1945814	0.81[ASW][hapmap];0.84[YRI][hapmap]
rs4944457	1.00[ASW][hapmap];0.94[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7115971	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs963146	0.81[ASW][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv898030	chr11:83730570-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83728200-83733200	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83730200-83733600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:83730600-83733600	Enhancers	Brain Angular Gyrus	brain
4	chr11:83730600-83734000	Enhancers	Brain Substantia Nigra	brain
5	chr11:83730600-83734400	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:83731000-83734000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:83731000-83734600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:83731200-83734000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:83731400-83733200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:83731400-83734200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:83731600-83733200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:83731600-83733200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:83731600-83733600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr11:83731800-83734200	Enhancers	Colon Smooth Muscle	Colon
15	chr11:83732000-83733400	Enhancers	Stomach Smooth Muscle	stomach
16	chr11:83732000-83734000	Enhancers	Brain Anterior Caudate	brain
17	chr11:83732200-83733200	Weak transcription	Brain Germinal Matrix	brain
18	chr11:83732200-83734400	Enhancers	Rectal Smooth Muscle	rectum
19	chr11:83732400-83733200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:83732400-83733600	Enhancers	Fetal Heart	heart
21	chr11:83732400-83734200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:83732400-83734400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr11:83732600-83733800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr11:83732600-83734000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr11:83732800-83733200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:83733000-83733200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr11:83733000-83733400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:83733000-83733600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:83733000-83733600	Enhancers	Ovary	ovary
30	chr11:83733000-83733800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:83733000-83734000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr11:83733000-83734400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:83733000-83734400	Enhancers	HUES64 Cell Line	embryonic stem cell

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