Variant report

Variant	rs2514168
Chromosome Location	chr11:83725697-83725698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10792705	1.00[JPT][hapmap]
rs10792707	1.00[JPT][hapmap]
rs10792710	1.00[JPT][hapmap]
rs10792712	0.84[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs10792713	0.81[JPT][hapmap]
rs10792716	0.81[JPT][hapmap]
rs10792717	0.81[JPT][hapmap]
rs10792718	0.81[JPT][hapmap]
rs10898192	0.97[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap]
rs10898199	0.81[JPT][hapmap]
rs1118277	1.00[YRI][hapmap]
rs11233881	0.81[ASN][1000 genomes]
rs11233900	0.86[JPT][hapmap]
rs12285610	0.81[CHD][hapmap];0.87[JPT][hapmap]
rs12574301	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs12577433	0.81[JPT][hapmap]
rs1384751	0.84[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs1384757	0.85[MEX][hapmap]
rs1483384	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1540188	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1573570	1.00[CEU][hapmap]
rs1573574	0.81[JPT][hapmap]
rs1601093	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1601095	0.97[CHD][hapmap];1.00[JPT][hapmap]
rs1894171	0.81[JPT][hapmap]
rs1894172	0.81[JPT][hapmap]
rs1945802	0.81[ASN][1000 genomes]
rs1945803	0.81[ASN][1000 genomes]
rs1945805	0.84[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1945814	0.84[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap]
rs1945815	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1945816	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1945817	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1945832	0.81[JPT][hapmap]
rs1982733	1.00[CEU][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1984374	0.81[JPT][hapmap]
rs2032401	0.81[JPT][hapmap]
rs2051472	0.81[JPT][hapmap]
rs2200204	0.95[MEX][hapmap]
rs2449584	0.85[AMR][1000 genomes]
rs2449597	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449599	0.83[AMR][1000 genomes]
rs2449600	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2514145	0.89[MEX][hapmap]
rs2514149	0.84[MEX][hapmap]
rs2514155	1.00[CEU][hapmap]
rs2514159	0.83[AMR][1000 genomes]
rs2514162	0.89[MEX][hapmap]
rs2514172	0.81[EUR][1000 genomes]
rs2625510	0.84[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap]
rs2625514	1.00[JPT][hapmap]
rs2625518	0.90[CHD][hapmap];1.00[JPT][hapmap]
rs2853022	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2853023	0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs3905309	0.81[JPT][hapmap]
rs4586191	0.84[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap]
rs4943885	0.84[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap]
rs4943886	0.81[JPT][hapmap]
rs4944460	0.84[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap]
rs4944461	0.81[JPT][hapmap]
rs4944463	0.81[JPT][hapmap]
rs4944464	0.81[JPT][hapmap]
rs6592163	0.81[JPT][hapmap]
rs7103649	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7109671	0.81[JPT][hapmap]
rs7114926	0.81[JPT][hapmap]
rs7924476	0.83[CHB][hapmap]
rs7924835	0.81[JPT][hapmap]
rs7927619	0.81[JPT][hapmap]
rs7928752	0.84[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap]
rs7952399	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs963146	0.83[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83723600-83731400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:83723800-83728200	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83723800-83730200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:83723800-83730600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:83723800-83730600	Weak transcription	Brain Substantia Nigra	brain
6	chr11:83724200-83731000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:83724400-83730200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:83725600-83725800	Enhancers	Liver	Liver

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