Variant report

Variant	rs2514145
Chromosome Location	chr11:83690825-83690826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10792700	0.98[ASN][1000 genomes]
rs10792712	1.00[ASW][hapmap]
rs10898192	1.00[ASW][hapmap]
rs1118277	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11233879	0.81[YRI][hapmap]
rs12418356	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1384749	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1384757	0.84[CHD][hapmap];0.89[JPT][hapmap];0.85[MEX][hapmap];0.83[ASN][1000 genomes]
rs1384758	0.92[CHD][hapmap];0.89[JPT][hapmap];0.85[MEX][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1483386	0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap]
rs1483411	0.82[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1545863	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1545864	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1601091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1601092	0.90[ASW][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap]
rs1601093	0.91[ASN][1000 genomes]
rs1982733	0.82[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2200204	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[ASN][1000 genomes]
rs2374466	0.98[ASN][1000 genomes]
rs2449584	0.91[ASN][1000 genomes]
rs2449589	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2449590	0.80[ASN][1000 genomes]
rs2449593	0.82[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2449595	1.00[ASN][1000 genomes]
rs2449596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2449597	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.97[ASN][1000 genomes]
rs2449599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2449600	0.91[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.89[ASN][1000 genomes]
rs2514143	0.98[ASN][1000 genomes]
rs2514147	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2514148	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2514149	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2514150	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2514151	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2514152	0.84[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs2514154	0.80[JPT][hapmap]
rs2514155	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2514159	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2514160	1.00[CEU][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514161	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514162	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514168	0.89[MEX][hapmap]
rs2514172	0.94[ASN][1000 genomes]
rs2625510	1.00[ASW][hapmap]
rs2625514	0.89[YRI][hapmap]
rs2853022	0.80[YRI][hapmap]
rs2853023	1.00[ASW][hapmap]
rs7107725	0.91[ASN][1000 genomes]
rs790349	0.88[JPT][hapmap]
rs790350	0.83[JPT][hapmap]
rs790364	0.84[MEX][hapmap]
rs790365	0.83[JPT][hapmap]
rs7934123	0.81[ASN][1000 genomes]
rs960532	0.82[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83683800-83692000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:83687600-83693000	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83688400-83692000	Weak transcription	Brain Anterior Caudate	brain
4	chr11:83689800-83692200	Enhancers	Fetal Heart	heart
5	chr11:83690400-83691200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:83690400-83691400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:83690400-83691600	Enhancers	Brain Hippocampus Middle	brain
8	chr11:83690600-83691000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:83690600-83691000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:83690600-83691400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:83690600-83691600	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:83690600-83692200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:83690600-83692200	Enhancers	Brain Substantia Nigra	brain
14	chr11:83690800-83691200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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