Variant report

Variant	rs2449590
Chromosome Location	chr11:83668039-83668040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10792698	0.84[AFR][1000 genomes]
rs1384757	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[ASN][1000 genomes]
rs1384758	0.95[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs1483401	0.81[AFR][1000 genomes]
rs1483411	0.90[CHB][hapmap];0.82[CHD][hapmap];0.87[ASN][1000 genomes]
rs1982733	0.81[ASN][1000 genomes]
rs2449588	0.81[CEU][hapmap]
rs2449589	0.99[ASN][1000 genomes]
rs2449593	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs2449595	0.80[ASN][1000 genomes]
rs2449596	0.81[ASN][1000 genomes]
rs2449597	0.81[ASN][1000 genomes]
rs2514143	0.81[ASN][1000 genomes]
rs2514145	0.80[ASN][1000 genomes]
rs2514147	0.81[ASN][1000 genomes]
rs2514148	0.81[ASN][1000 genomes]
rs2514150	0.86[ASN][1000 genomes]
rs2514151	0.86[ASN][1000 genomes]
rs2514152	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[JPT][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2514154	0.94[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs2514160	0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs2514161	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs2514162	0.90[CHB][hapmap];0.84[CHD][hapmap];0.87[ASN][1000 genomes]
rs2514172	0.81[ASN][1000 genomes]
rs708240	0.96[ASN][1000 genomes]
rs708241	0.95[ASN][1000 genomes]
rs790349	1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs790350	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs790364	0.95[CHB][hapmap];0.92[CHD][hapmap];0.90[ASN][1000 genomes]
rs790365	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs790369	0.84[AFR][1000 genomes]
rs790370	0.84[AFR][1000 genomes]
rs960532	0.90[CHB][hapmap];0.85[CHD][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83662600-83676200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83663000-83675800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:83663000-83676000	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83663200-83676000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83663400-83675600	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:83666200-83669000	Enhancers	Ovary	ovary
7	chr11:83667400-83681000	Weak transcription	Brain Anterior Caudate	brain
8	chr11:83667600-83668600	Weak transcription	Gastric	stomach
9	chr11:83667800-83669200	Enhancers	Liver	Liver
10	chr11:83667800-83669400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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