Variant report

Variant	rs790370
Chromosome Location	chr11:83650002-83650003
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10792698	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1483401	0.88[JPT][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2449588	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2449590	0.84[AFR][1000 genomes]
rs2514152	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs708241	0.88[JPT][hapmap]
rs790346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs790369	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555608	chr11:83633189-83651102	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83639600-83659400	Weak transcription	Ovary	ovary
3	chr11:83649200-83662400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:83649400-83650400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr11:83649800-83650200	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:83649800-83650400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:83650000-83650400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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