Variant report

Variant	rs2514147
Chromosome Location	chr11:83688582-83688583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10792700	0.98[ASN][1000 genomes]
rs1118277	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12418356	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1384749	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1384757	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs1384758	0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1483386	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1483411	0.82[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1545863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1545864	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1601091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1601092	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1601093	0.91[ASN][1000 genomes]
rs1982733	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2200204	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2374466	0.98[ASN][1000 genomes]
rs2449584	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2449589	0.81[ASN][1000 genomes]
rs2449590	0.81[ASN][1000 genomes]
rs2449593	0.83[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2449595	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2449596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[ASN][1000 genomes]
rs2449599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2449600	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2514143	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2514145	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2514148	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2514150	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514151	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514152	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2514154	0.81[JPT][hapmap]
rs2514155	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2514159	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[ASN][1000 genomes]
rs2514160	1.00[CEU][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514161	0.85[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514162	0.85[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514172	0.94[ASN][1000 genomes]
rs7107725	0.92[ASN][1000 genomes]
rs790349	0.89[JPT][hapmap]
rs790350	0.83[JPT][hapmap]
rs790365	0.83[JPT][hapmap]
rs7934123	0.82[ASN][1000 genomes]
rs960532	0.82[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv983047	chr11:83687828-83689052	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83683800-83692000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:83684000-83690400	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83684000-83690600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83686400-83688600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:83686800-83688600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:83687400-83690600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:83687600-83690600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:83687600-83690600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:83687600-83693000	Weak transcription	Brain Angular Gyrus	brain
10	chr11:83688400-83689000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:83688400-83692000	Weak transcription	Brain Anterior Caudate	brain

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