Variant report

Variant	rs2514162
Chromosome Location	chr11:83680201-83680202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10792700	0.91[ASN][1000 genomes]
rs1118277	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs12418356	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs1384749	0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1384757	0.90[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.89[ASN][1000 genomes]
rs1384758	0.85[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1483386	0.86[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap]
rs1483411	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1545863	0.82[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1545864	0.86[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1601091	0.82[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1601092	0.82[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]
rs1601093	0.84[ASN][1000 genomes]
rs1982733	0.86[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.92[ASN][1000 genomes]
rs2200204	0.86[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.89[ASN][1000 genomes]
rs2374466	0.89[ASN][1000 genomes]
rs2449584	0.84[ASN][1000 genomes]
rs2449589	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2449590	0.90[CHB][hapmap];0.84[CHD][hapmap];0.87[ASN][1000 genomes]
rs2449593	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2449595	0.91[ASN][1000 genomes]
rs2449596	0.82[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2449597	0.82[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.92[ASN][1000 genomes]
rs2449599	0.82[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs2449600	0.81[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.87[ASN][1000 genomes]
rs2514143	0.91[ASN][1000 genomes]
rs2514145	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514147	0.85[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514148	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514149	0.82[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2514150	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2514151	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2514152	0.90[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2514154	0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2514155	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2514159	0.86[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2514160	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2514168	0.89[MEX][hapmap]
rs2514172	0.92[ASN][1000 genomes]
rs708240	0.83[ASN][1000 genomes]
rs708241	0.84[ASN][1000 genomes]
rs7107725	0.85[ASN][1000 genomes]
rs790349	0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs790350	0.90[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs790364	0.85[CHB][hapmap];0.84[MEX][hapmap]
rs790365	0.90[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs960532	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83667400-83681000	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83676400-83681800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:83678800-83682600	Enhancers	Brain Substantia Nigra	brain
4	chr11:83679200-83684000	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:83679600-83684000	Enhancers	Brain Hippocampus Middle	brain
6	chr11:83680000-83680600	Weak transcription	Brain Angular Gyrus	brain
7	chr11:83680000-83681200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:83680000-83681200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:83680200-83681400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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