Variant report

Variant	rs2449597
Chromosome Location	chr11:83694583-83694584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10792700	0.98[ASN][1000 genomes]
rs10898192	0.89[MEX][hapmap]
rs1118277	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12418356	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1384749	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1384757	0.89[JPT][hapmap];0.85[MEX][hapmap];0.83[ASN][1000 genomes]
rs1384758	0.87[CHD][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs1483386	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs1483411	0.82[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs1545863	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1545864	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1573570	1.00[CEU][hapmap]
rs1601091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1601092	0.91[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.89[MKK][hapmap];0.81[YRI][hapmap]
rs1601093	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1945815	1.00[CEU][hapmap]
rs1945817	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1982733	0.91[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2200204	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2374466	0.95[ASN][1000 genomes]
rs2449584	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2449589	0.81[ASN][1000 genomes]
rs2449590	0.81[ASN][1000 genomes]
rs2449593	0.82[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2449595	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2449596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2449599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2449600	0.92[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2514143	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2514145	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.97[ASN][1000 genomes]
rs2514147	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[ASN][1000 genomes]
rs2514148	0.98[ASN][1000 genomes]
rs2514149	0.90[ASW][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2514150	0.93[ASN][1000 genomes]
rs2514151	0.93[ASN][1000 genomes]
rs2514152	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs2514154	0.80[JPT][hapmap]
rs2514155	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2514159	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2514160	0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs2514161	0.82[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2514162	0.82[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.92[ASN][1000 genomes]
rs2514168	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2514172	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2625510	0.89[MEX][hapmap]
rs2853022	1.00[CEU][hapmap]
rs2853023	0.82[MEX][hapmap]
rs7107725	0.90[ASN][1000 genomes]
rs790349	0.88[JPT][hapmap]
rs790350	0.83[JPT][hapmap]
rs790365	0.83[JPT][hapmap]
rs7952399	1.00[CEU][hapmap]
rs960532	0.82[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83691600-83701200	Weak transcription	Brain Hippocampus Middle	brain

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