Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83666390..83667468-chr11:83972209..83973439,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10792700	0.81[ASN][1000 genomes]
rs1384757	0.94[ASN][1000 genomes]
rs1384758	0.93[ASN][1000 genomes]
rs1483411	0.86[ASN][1000 genomes]
rs1982733	0.81[ASN][1000 genomes]
rs2449590	0.99[ASN][1000 genomes]
rs2449593	0.86[ASN][1000 genomes]
rs2449595	0.81[ASN][1000 genomes]
rs2449596	0.81[ASN][1000 genomes]
rs2449597	0.81[ASN][1000 genomes]
rs2449599	0.81[ASN][1000 genomes]
rs2514145	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2514147	0.81[ASN][1000 genomes]
rs2514148	0.81[ASN][1000 genomes]
rs2514149	0.81[ASN][1000 genomes]
rs2514150	0.86[ASN][1000 genomes]
rs2514151	0.86[ASN][1000 genomes]
rs2514152	0.97[ASN][1000 genomes]
rs2514154	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2514160	0.86[ASN][1000 genomes]
rs2514161	0.86[ASN][1000 genomes]
rs2514162	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2514172	0.81[ASN][1000 genomes]
rs708240	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs708241	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs790349	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs790350	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs790364	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs790365	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs960532	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83662600-83676200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83662800-83667800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:83663000-83675800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:83663000-83676000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83663200-83676000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:83663400-83675600	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:83666200-83667800	Enhancers	Pancreas	Pancrea
8	chr11:83666200-83669000	Enhancers	Ovary	ovary
9	chr11:83666600-83667000	Weak transcription	Gastric	stomach
10	chr11:83666800-83667800	Weak transcription	Liver	Liver

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