Variant report

Variant	rs790364
Chromosome Location	chr11:83645072-83645073
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1384757	0.95[CHB][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs1384758	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs1483411	0.85[CHB][hapmap]
rs2449589	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2449590	0.95[CHB][hapmap];0.92[CHD][hapmap];0.90[ASN][1000 genomes]
rs2449593	0.85[CHB][hapmap]
rs2514145	0.84[MEX][hapmap]
rs2514152	0.95[CHB][hapmap];0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs2514154	0.88[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2514160	0.89[CHB][hapmap]
rs2514161	0.85[CHB][hapmap]
rs2514162	0.85[CHB][hapmap];0.84[MEX][hapmap]
rs708240	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs708241	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs790349	0.95[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs790350	0.95[CHB][hapmap];0.92[CHD][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs790365	0.95[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs960532	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555608	chr11:83633189-83651102	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83634600-83649400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:83639400-83649600	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83639600-83659400	Weak transcription	Ovary	ovary
5	chr11:83644000-83645600	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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