Variant report

Variant	rs12285610
Chromosome Location	chr11:83759244-83759245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10792705	0.87[JPT][hapmap]
rs10792707	0.87[JPT][hapmap]
rs10792710	0.87[JPT][hapmap]
rs10792712	0.84[CHD][hapmap];0.87[JPT][hapmap]
rs10792718	0.92[GIH][hapmap]
rs10898192	0.84[CHD][hapmap];0.86[GIH][hapmap];0.87[JPT][hapmap]
rs10898194	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12806160	0.85[AFR][1000 genomes]
rs1384751	0.84[CHD][hapmap];0.87[JPT][hapmap]
rs1483384	0.87[JPT][hapmap]
rs1540188	0.87[JPT][hapmap]
rs1573574	0.86[GIH][hapmap]
rs1601095	0.84[CHD][hapmap];0.87[JPT][hapmap]
rs1945805	0.81[CHD][hapmap];0.87[JPT][hapmap]
rs1945814	0.81[CHD][hapmap];0.80[JPT][hapmap]
rs1945815	0.85[JPT][hapmap]
rs1945816	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[EUR][1000 genomes]
rs2298830	0.86[GIH][hapmap]
rs2514168	0.81[CHD][hapmap];0.87[JPT][hapmap]
rs2625510	0.84[CHD][hapmap];0.87[JPT][hapmap]
rs2625514	0.87[JPT][hapmap]
rs2625518	0.87[JPT][hapmap]
rs2853022	0.92[JPT][hapmap]
rs2853023	0.85[JPT][hapmap]
rs4373957	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4421763	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4528354	1.00[EUR][1000 genomes]
rs4586191	0.84[CHD][hapmap];0.80[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs4943885	1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs4944459	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4944460	0.83[CHD][hapmap];0.80[JPT][hapmap]
rs4944463	0.86[GIH][hapmap]
rs7103649	1.00[CEU][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap]
rs7928752	0.84[CHD][hapmap];0.82[GIH][hapmap];0.80[JPT][hapmap]
rs963146	0.84[CHD][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898027	chr11:83717887-83798485	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv898030	chr11:83730570-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv1806027	chr11:83740599-83775326	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83755200-83764000	Weak transcription	Brain Substantia Nigra	brain

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