Variant report

Variant	rs1945801
Chromosome Location	chr11:83805810-83805811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs1014066	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10501555	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10736760	0.85[CHB][hapmap]
rs10751104	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10751105	0.81[CHB][hapmap]
rs10792705	0.85[CHB][hapmap]
rs10792707	0.84[CHB][hapmap]
rs10792710	0.85[CHB][hapmap]
rs10792712	0.89[CHB][hapmap]
rs10792713	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs10792714	0.90[ASN][1000 genomes]
rs10792715	0.91[ASN][1000 genomes]
rs10792716	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10792717	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs10792718	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10792719	0.89[JPT][hapmap]
rs10792722	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs10792723	0.84[JPT][hapmap]
rs10792725	0.85[CHB][hapmap]
rs10898192	0.84[CHB][hapmap]
rs10898195	0.88[ASN][1000 genomes]
rs10898197	0.80[ASN][1000 genomes]
rs10898198	0.88[ASN][1000 genomes]
rs10898199	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10898202	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10898204	0.84[JPT][hapmap]
rs10898205	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs10898206	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10898207	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs11233900	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs11602701	0.85[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs12363188	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12574301	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs12575314	0.87[ASN][1000 genomes]
rs12577433	0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs12806160	0.82[ASN][1000 genomes]
rs1377746	0.81[CHB][hapmap]
rs1384751	0.89[CHB][hapmap]
rs1483384	0.90[CHB][hapmap]
rs1540188	0.90[CHB][hapmap]
rs1551334	0.81[CHB][hapmap]
rs1573569	0.88[ASN][1000 genomes]
rs1573570	1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1573571	0.88[ASN][1000 genomes]
rs1573572	0.81[CHB][hapmap]
rs1573574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1601095	0.84[CHB][hapmap]
rs1869472	0.81[CHB][hapmap]
rs1894169	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1894170	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1894171	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs1894172	1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs1945799	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1945800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1945805	0.89[CHB][hapmap]
rs1945807	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1945808	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs1945809	0.86[ASN][1000 genomes]
rs1945813	0.82[ASN][1000 genomes]
rs1945814	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs1945815	0.84[CHB][hapmap]
rs1945816	0.90[CHB][hapmap]
rs1945820	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1945822	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1945823	0.89[JPT][hapmap]
rs1945824	0.89[JPT][hapmap]
rs1945825	0.89[JPT][hapmap]
rs1945826	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1945827	0.87[JPT][hapmap]
rs1945828	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1945830	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1945832	1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs1984374	1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs2000961	0.81[CHB][hapmap]
rs2032401	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs2051472	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs2105806	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2298830	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2625510	0.89[CHB][hapmap]
rs2625514	0.85[CHB][hapmap]
rs2625518	0.84[CHB][hapmap]
rs2853022	0.87[CHB][hapmap]
rs2853023	0.81[CHB][hapmap]
rs3750917	0.91[ASN][1000 genomes]
rs3905309	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs4322419	0.88[ASN][1000 genomes]
rs4586191	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs4943885	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs4943886	1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs4944460	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs4944461	1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs4944462	0.87[ASN][1000 genomes]
rs4944463	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944464	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs6592158	0.85[ASN][1000 genomes]
rs6592159	0.85[ASN][1000 genomes]
rs6592163	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs6592164	0.84[JPT][hapmap]
rs6592165	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs7103649	0.89[CHB][hapmap]
rs7104249	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs7108582	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7108711	0.88[ASN][1000 genomes]
rs7109671	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs7114261	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs7114926	1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs7122677	0.88[ASN][1000 genomes]
rs7122855	0.88[ASN][1000 genomes]
rs7122967	0.88[ASN][1000 genomes]
rs7123054	0.87[ASN][1000 genomes]
rs7123516	0.89[JPT][hapmap]
rs7123584	0.89[JPT][hapmap]
rs7126268	0.88[ASN][1000 genomes]
rs756197	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs7924360	0.87[ASN][1000 genomes]
rs7924443	0.87[ASN][1000 genomes]
rs7924476	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7924503	1.00[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs7924835	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs7925643	0.86[JPT][hapmap]
rs7927039	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7927619	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs7928752	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs7929774	1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs7935399	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7952161	0.85[ASN][1000 genomes]
rs7952171	0.87[ASN][1000 genomes]
rs7952399	0.94[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs7952517	0.87[ASN][1000 genomes]
rs872510	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs872511	0.89[JPT][hapmap]
rs872512	0.89[JPT][hapmap]
rs884873	0.87[JPT][hapmap]
rs963146	0.89[CHB][hapmap]
rs970226	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2751034	chr11:83801970-83840272	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83801400-83813400	Weak transcription	Brain Germinal Matrix	brain
2	chr11:83802600-83812200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83803000-83812600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:83803200-83807000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83803200-83807400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:83803400-83807800	Weak transcription	Fetal Heart	heart
7	chr11:83803400-83808200	Weak transcription	Brain Substantia Nigra	brain
8	chr11:83803400-83811600	Weak transcription	Brain Angular Gyrus	brain
9	chr11:83804400-83807000	Weak transcription	Brain Hippocampus Middle	brain

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