Variant report

Variant	rs1377746
Chromosome Location	chr11:83899028-83899029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 167 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs10128587	0.83[JPT][hapmap]
rs1014066	1.00[ASW][hapmap];0.90[CHB][hapmap];0.96[GIH][hapmap];0.87[MEX][hapmap]
rs1022308	0.83[JPT][hapmap]
rs1040131	0.88[JPT][hapmap]
rs10501555	0.90[CHB][hapmap];0.96[GIH][hapmap];0.87[MEX][hapmap]
rs10732891	0.97[ASN][1000 genomes]
rs10736760	0.95[CHB][hapmap];0.86[GIH][hapmap];0.81[MEX][hapmap]
rs10736762	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10736763	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10751104	0.90[CHB][hapmap]
rs10751105	1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap]
rs10751106	0.85[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap]
rs10751107	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10751109	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs10792713	0.81[CHB][hapmap]
rs10792716	0.81[CHB][hapmap]
rs10792717	0.81[CHB][hapmap]
rs10792718	0.81[CHB][hapmap]
rs10792719	0.85[CHB][hapmap]
rs10792722	0.85[CHB][hapmap];0.82[GIH][hapmap];0.81[MEX][hapmap]
rs10792723	0.85[CHB][hapmap]
rs10792725	0.95[CHB][hapmap];0.86[GIH][hapmap];0.81[MEX][hapmap]
rs10792727	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs10792728	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs10792729	0.92[ASN][1000 genomes]
rs10792731	0.95[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap]
rs10792740	0.89[JPT][hapmap]
rs10792742	0.89[JPT][hapmap]
rs10792744	0.89[JPT][hapmap]
rs10792745	0.89[JPT][hapmap]
rs10898199	0.81[CHB][hapmap]
rs10898202	0.86[CHB][hapmap]
rs10898204	0.85[CHB][hapmap]
rs10898205	0.90[CHB][hapmap];0.86[GIH][hapmap];0.81[MEX][hapmap]
rs10898206	0.90[CHB][hapmap]
rs10898207	0.90[CHB][hapmap];0.85[GIH][hapmap]
rs10898214	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs10898215	0.83[JPT][hapmap]
rs11233900	0.81[CHB][hapmap]
rs11233930	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11233953	0.89[JPT][hapmap];0.81[LWK][hapmap]
rs11233954	0.89[JPT][hapmap];0.84[LWK][hapmap]
rs11233956	0.89[JPT][hapmap]
rs11233963	0.89[JPT][hapmap]
rs12272414	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12278134	0.89[JPT][hapmap]
rs12281587	0.89[JPT][hapmap]
rs12363188	0.85[CHB][hapmap]
rs12574301	0.83[CHB][hapmap]
rs1349820	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs1377745	0.90[CHB][hapmap]
rs1377747	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1377748	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs1399617	0.89[JPT][hapmap]
rs1399618	0.89[JPT][hapmap]
rs1454016	0.95[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs1454017	0.90[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs1454019	0.90[CHB][hapmap];0.80[YRI][hapmap];0.82[AMR][1000 genomes]
rs1454020	0.91[ASN][1000 genomes]
rs1454021	0.89[JPT][hapmap]
rs1454022	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1454023	0.89[JPT][hapmap]
rs1454026	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1454027	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.95[YRI][hapmap];0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1515084	0.83[JPT][hapmap]
rs1515092	0.84[JPT][hapmap]
rs1515094	0.89[JPT][hapmap]
rs1551334	1.00[CHB][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs1551335	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1573570	0.80[CHB][hapmap]
rs1573572	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1573574	0.81[CHB][hapmap]
rs1620817	0.95[CHB][hapmap]
rs1793037	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1793038	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1793039	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1813461	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1823844	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1849877	0.89[JPT][hapmap]
rs1869470	0.89[JPT][hapmap]
rs1869471	0.84[JPT][hapmap]
rs1869472	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1894169	0.90[CHB][hapmap]
rs1894170	0.90[CHB][hapmap]
rs1894171	0.81[CHB][hapmap]
rs1894172	0.81[CHB][hapmap]
rs1945799	0.86[CHB][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap]
rs1945800	0.81[CHB][hapmap];0.81[MEX][hapmap]
rs1945801	0.81[CHB][hapmap]
rs1945807	0.85[CHB][hapmap]
rs1945808	0.85[CHB][hapmap];0.86[GIH][hapmap];0.81[MEX][hapmap]
rs1945820	0.90[CHB][hapmap]
rs1945822	0.90[CHB][hapmap]
rs1945823	0.95[CHB][hapmap]
rs1945824	0.95[CHB][hapmap]
rs1945825	0.95[CHB][hapmap]
rs1945826	1.00[ASW][hapmap];0.90[CHB][hapmap];0.96[GIH][hapmap];0.87[MEX][hapmap]
rs1945827	0.88[CHB][hapmap]
rs1945828	1.00[ASW][hapmap];0.90[CHB][hapmap];0.96[GIH][hapmap];0.87[MEX][hapmap]
rs1945832	0.81[CHB][hapmap]
rs1984374	0.81[CHB][hapmap]
rs2000961	1.00[ASW][hapmap];0.90[CHB][hapmap];0.96[GIH][hapmap];0.87[MEX][hapmap]
rs2032401	0.81[CHB][hapmap]
rs2051472	0.81[CHB][hapmap];0.81[GIH][hapmap];0.81[MEX][hapmap]
rs2105806	0.85[CHB][hapmap]
rs2123818	0.90[ASN][1000 genomes]
rs2156848	0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2168007	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2213112	0.90[ASN][1000 genomes]
rs2213113	0.89[ASN][1000 genomes]
rs2298830	0.86[CHB][hapmap]
rs3905309	0.81[CHB][hapmap]
rs4354715	0.83[JPT][hapmap]
rs4454750	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4547116	0.95[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs4943886	0.81[CHB][hapmap]
rs4943888	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4943889	0.89[JPT][hapmap]
rs4944461	0.81[CHB][hapmap]
rs4944463	0.81[CHB][hapmap]
rs4944464	0.81[CHB][hapmap]
rs4944468	0.95[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs4944471	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4944472	0.85[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4944473	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6592163	0.81[CHB][hapmap];0.81[GIH][hapmap];0.81[MEX][hapmap]
rs6592164	0.85[CHB][hapmap]
rs6592165	0.85[CHB][hapmap];0.86[GIH][hapmap];0.81[MEX][hapmap]
rs7103429	0.88[JPT][hapmap]
rs7104249	0.83[CHB][hapmap]
rs7106175	0.89[JPT][hapmap]
rs7108582	1.00[ASW][hapmap];0.90[CHB][hapmap];0.96[GIH][hapmap];0.87[MEX][hapmap]
rs7109671	0.81[CHB][hapmap];0.81[GIH][hapmap];0.81[MEX][hapmap]
rs7112322	0.89[JPT][hapmap]
rs7114261	0.95[CHB][hapmap]
rs7114926	0.81[CHB][hapmap]
rs7120366	0.81[AFR][1000 genomes]
rs7123516	0.85[CHB][hapmap]
rs7123584	0.85[CHB][hapmap]
rs7130225	0.89[JPT][hapmap]
rs756197	0.90[CHB][hapmap]
rs7924503	0.81[CHB][hapmap]
rs7924835	0.81[CHB][hapmap]
rs7925243	0.83[JPT][hapmap]
rs7925643	0.84[CHB][hapmap]
rs7927039	0.90[CHB][hapmap]
rs7927619	0.81[CHB][hapmap]
rs7933566	0.89[JPT][hapmap]
rs7935399	0.86[CHB][hapmap]
rs7937260	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7937925	0.89[JPT][hapmap]
rs7941004	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7943267	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7948263	0.90[CHB][hapmap]
rs7951073	0.83[ASN][1000 genomes]
rs872510	0.90[CHB][hapmap]
rs872511	0.90[CHB][hapmap]
rs872512	0.90[CHB][hapmap]
rs884873	0.89[CHB][hapmap]
rs896996	0.89[JPT][hapmap]
rs896997	0.89[JPT][hapmap]
rs963259	0.89[JPT][hapmap]
rs970226	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs988322	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83889800-83900400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:83898600-83899600	Enhancers	Brain Anterior Caudate	brain
3	chr11:83898600-83899800	Enhancers	Brain Substantia Nigra	brain
4	chr11:83898600-83900200	Enhancers	Brain Hippocampus Middle	brain
5	chr11:83898800-83899600	Enhancers	Brain Cingulate Gyrus	brain

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