Variant report

Variant	rs2168007
Chromosome Location	chr11:83911973-83911974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10732891	0.90[ASN][1000 genomes]
rs10736760	0.82[ASN][1000 genomes]
rs10736762	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10736763	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10751107	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10751109	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10792725	0.82[ASN][1000 genomes]
rs10792727	0.88[ASN][1000 genomes]
rs10792728	0.85[ASN][1000 genomes]
rs10792729	0.86[ASN][1000 genomes]
rs11233930	0.91[ASN][1000 genomes]
rs12272414	0.92[ASN][1000 genomes]
rs1349820	0.97[ASN][1000 genomes]
rs1377746	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1377747	0.91[ASN][1000 genomes]
rs1377748	0.95[ASN][1000 genomes]
rs1454016	0.85[ASN][1000 genomes]
rs1454017	0.85[ASN][1000 genomes]
rs1454020	0.86[ASN][1000 genomes]
rs1454022	0.87[ASN][1000 genomes]
rs1454027	0.85[ASN][1000 genomes]
rs1551334	0.86[ASN][1000 genomes]
rs1551335	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1573572	0.90[ASN][1000 genomes]
rs1620817	0.82[ASN][1000 genomes]
rs1670679	0.82[ASN][1000 genomes]
rs1793037	0.91[ASN][1000 genomes]
rs1793038	0.86[ASN][1000 genomes]
rs1793039	0.86[ASN][1000 genomes]
rs1813461	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1823844	0.90[ASN][1000 genomes]
rs1869472	0.91[ASN][1000 genomes]
rs2000961	0.82[ASN][1000 genomes]
rs2123818	1.00[ASN][1000 genomes]
rs2156848	0.97[ASN][1000 genomes]
rs2213112	1.00[ASN][1000 genomes]
rs2213113	0.99[ASN][1000 genomes]
rs4454750	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4547116	0.85[ASN][1000 genomes]
rs4943888	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944468	0.85[ASN][1000 genomes]
rs4944471	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944472	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4944473	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7937260	0.86[ASN][1000 genomes]
rs7943267	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7948263	0.83[ASN][1000 genomes]
rs7951073	0.83[ASN][1000 genomes]
rs970226	0.83[ASN][1000 genomes]
rs9787893	0.82[ASN][1000 genomes]
rs988322	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83911400-83912200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:83911800-83912000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:83911800-83912200	Enhancers	Cortex derived primary cultured neurospheres	brain

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