Variant report

Variant	rs1454022
Chromosome Location	chr11:83903422-83903423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10732891	0.93[ASN][1000 genomes]
rs10736762	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10736763	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10751107	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10792727	0.85[ASN][1000 genomes]
rs10792728	0.87[ASN][1000 genomes]
rs10792729	0.88[ASN][1000 genomes]
rs11233930	0.81[ASN][1000 genomes]
rs12272414	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1349820	0.89[ASN][1000 genomes]
rs1377746	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1377747	0.93[ASN][1000 genomes]
rs1377748	0.90[ASN][1000 genomes]
rs1454016	0.89[ASN][1000 genomes]
rs1454017	0.89[ASN][1000 genomes]
rs1454020	0.86[ASN][1000 genomes]
rs1454027	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1551334	0.83[ASN][1000 genomes]
rs1551335	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1573572	0.81[ASN][1000 genomes]
rs1793037	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1793038	0.88[ASN][1000 genomes]
rs1793039	0.88[ASN][1000 genomes]
rs1813461	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1823844	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1869472	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2123818	0.87[ASN][1000 genomes]
rs2156848	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2168007	0.87[ASN][1000 genomes]
rs2213112	0.87[ASN][1000 genomes]
rs2213113	0.86[ASN][1000 genomes]
rs4454750	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4547116	0.89[ASN][1000 genomes]
rs4943888	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4944468	0.89[ASN][1000 genomes]
rs4944471	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4944472	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4944473	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7937260	0.93[ASN][1000 genomes]
rs7943267	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7951073	0.84[ASN][1000 genomes]
rs970226	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9704106	0.83[ASN][1000 genomes]
rs988322	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83899800-83904200	Weak transcription	Brain Substantia Nigra	brain
2	chr11:83900200-83904600	Weak transcription	Brain Hippocampus Middle	brain

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