Variant report

Variant	rs1551335
Chromosome Location	chr11:83923274-83923275
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83921898..83923535-chr11:83927297..83928996,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10732891	0.87[ASN][1000 genomes]
rs10736762	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10736763	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751107	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751109	0.80[EUR][1000 genomes]
rs10792727	0.85[ASN][1000 genomes]
rs10792728	0.82[ASN][1000 genomes]
rs10792729	0.83[ASN][1000 genomes]
rs11233930	0.87[ASN][1000 genomes]
rs12272414	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1349820	0.93[ASN][1000 genomes]
rs1377746	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1377747	0.88[ASN][1000 genomes]
rs1377748	0.91[ASN][1000 genomes]
rs1454016	0.82[ASN][1000 genomes]
rs1454017	0.82[ASN][1000 genomes]
rs1454020	0.83[ASN][1000 genomes]
rs1454022	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1454027	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1551334	0.83[ASN][1000 genomes]
rs1573572	0.87[ASN][1000 genomes]
rs1793037	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1793038	0.83[ASN][1000 genomes]
rs1793039	0.83[ASN][1000 genomes]
rs1813461	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1823844	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1869472	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2123818	0.97[ASN][1000 genomes]
rs2156848	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2168007	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2213112	0.97[ASN][1000 genomes]
rs2213113	0.96[ASN][1000 genomes]
rs4454750	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4547116	0.82[ASN][1000 genomes]
rs4943888	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944468	0.82[ASN][1000 genomes]
rs4944471	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944472	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944473	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120366	0.80[AMR][1000 genomes]
rs7937260	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7943267	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7948263	0.80[ASN][1000 genomes]
rs970226	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs988322	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83922800-83923400	Enhancers	Fetal Brain Female	brain
2	chr11:83923000-83923400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:83923000-83923400	Flanking Active TSS	Brain Anterior Caudate	brain
4	chr11:83923000-83923600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr11:83923000-83924000	Active TSS	Brain Angular Gyrus	brain
6	chr11:83923000-83924000	Active TSS	Brain Substantia Nigra	brain
7	chr11:83923000-83924200	Active TSS	Brain Cingulate Gyrus	brain
8	chr11:83923000-83924400	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr11:83923200-83923400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:83923200-83924200	Active TSS	Brain Hippocampus Middle	brain
11	chr11:83923200-83924400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:83923200-83924400	Active TSS	GM12878-XiMat	blood

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