Variant report

Variant	rs970226
Chromosome Location	chr11:83891822-83891823
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs1014066	0.85[CHB][hapmap]
rs10501555	0.85[CHB][hapmap]
rs10732891	0.90[ASN][1000 genomes]
rs10736760	0.90[CHB][hapmap]
rs10736762	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10736763	0.90[EUR][1000 genomes]
rs10751105	0.95[CHB][hapmap]
rs10751106	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs10751107	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10792713	0.85[CHB][hapmap]
rs10792716	0.86[CHB][hapmap]
rs10792717	0.85[CHB][hapmap]
rs10792718	0.85[CHB][hapmap]
rs10792722	0.80[CHB][hapmap]
rs10792725	0.90[CHB][hapmap]
rs10792727	0.86[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10792728	0.86[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs10792729	0.88[ASN][1000 genomes]
rs10792731	0.90[CHB][hapmap]
rs10898199	0.85[CHB][hapmap]
rs10898202	0.91[CHB][hapmap]
rs10898205	0.85[CHB][hapmap]
rs10898207	0.85[CHB][hapmap]
rs11233900	0.86[CHB][hapmap]
rs11233930	0.81[ASN][1000 genomes]
rs12272414	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12363188	0.90[CHB][hapmap]
rs12574301	0.89[CHB][hapmap]
rs12577433	0.82[CHB][hapmap]
rs1349820	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs1377746	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1377747	0.86[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs1377748	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs1454016	0.83[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs1454017	0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs1454020	0.86[ASN][1000 genomes]
rs1454022	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1454026	0.81[CHB][hapmap]
rs1454027	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1551334	0.95[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs1551335	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1573570	0.85[CHB][hapmap]
rs1573572	0.95[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs1573574	0.85[CHB][hapmap]
rs1620817	0.81[CHB][hapmap]
rs1793037	0.86[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1793038	0.86[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs1793039	0.86[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1813461	0.86[EUR][1000 genomes]
rs1823844	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1869472	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1894171	0.86[CHB][hapmap]
rs1894172	0.85[CHB][hapmap]
rs1945799	0.90[CHB][hapmap]
rs1945800	0.85[CHB][hapmap]
rs1945801	0.86[CHB][hapmap]
rs1945807	0.90[CHB][hapmap]
rs1945808	0.80[CHB][hapmap]
rs1945820	0.85[CHB][hapmap]
rs1945822	0.85[CHB][hapmap]
rs1945823	0.81[CHB][hapmap]
rs1945824	0.81[CHB][hapmap]
rs1945825	0.81[CHB][hapmap]
rs1945826	0.85[CHB][hapmap]
rs1945828	0.85[CHB][hapmap]
rs1945832	0.85[CHB][hapmap]
rs1984374	0.86[CHB][hapmap]
rs2000961	0.85[CHB][hapmap]
rs2032401	0.85[CHB][hapmap]
rs2051472	0.85[CHB][hapmap]
rs2105806	0.80[CHB][hapmap]
rs2123818	0.83[ASN][1000 genomes]
rs2156848	0.81[CHB][hapmap];0.82[AMR][1000 genomes]
rs2168007	0.83[ASN][1000 genomes]
rs2213112	0.83[ASN][1000 genomes]
rs2213113	0.82[ASN][1000 genomes]
rs2298830	0.90[CHB][hapmap]
rs3905309	0.86[CHB][hapmap]
rs4454750	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4547116	0.90[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs4943886	0.85[CHB][hapmap]
rs4943888	0.90[EUR][1000 genomes]
rs4944461	0.85[CHB][hapmap]
rs4944463	0.85[CHB][hapmap]
rs4944464	0.86[CHB][hapmap]
rs4944468	0.90[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs4944471	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]
rs4944472	0.85[CEU][hapmap];0.90[CHB][hapmap];0.82[EUR][1000 genomes]
rs4944473	0.82[EUR][1000 genomes]
rs6592163	0.85[CHB][hapmap]
rs6592165	0.80[CHB][hapmap]
rs7108582	0.85[CHB][hapmap]
rs7109671	0.85[CHB][hapmap]
rs7114261	0.81[CHB][hapmap]
rs7114926	0.86[CHB][hapmap]
rs756197	0.85[CHB][hapmap]
rs7924476	0.84[CHB][hapmap]
rs7924503	0.86[CHB][hapmap]
rs7924835	0.86[CHB][hapmap]
rs7927039	0.85[CHB][hapmap]
rs7927619	0.86[CHB][hapmap]
rs7929774	0.83[CHB][hapmap]
rs7935399	0.91[CHB][hapmap]
rs7937260	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7941004	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs7943267	0.85[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs872510	0.85[CHB][hapmap]
rs988322	1.00[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83889800-83900400	Weak transcription	H1 Cell Line	embryonic stem cell

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